Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0504
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    87   1e-17
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    85   5e-17
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    84   7e-17
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    64   1e-10
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    36   0.018
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.023
U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    30   1.5  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    27   8.2  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 40/87 (45%), Positives = 52/87 (59%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 426
           + +FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+    
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111

Query: 427 XXXXXXXXXXXXXXXXXXXXXRPNTIR 507
                                RPNT+R
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVR 138



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           G NT+T+LVE ++A  V+IAHDV+P+E+VL LPALCR
Sbjct: 140 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCR 176



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           NPLFEKR +NF IGQ IQP +D++
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVT 53


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 35/56 (62%), Positives = 46/56 (82%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           + +FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           G NT+T+LVE ++A  V+IAHDV+P+E+VL LPALCR
Sbjct: 120 GVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCR 156



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           NPLFEKR +NF IGQ IQP +D++
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVT 53


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 35/56 (62%), Positives = 46/56 (82%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 414
           + +FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           NPLFEKR +NF IGQ IQP +D++
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVT 156


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/38 (68%), Positives = 32/38 (84%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 360
           + +FV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLS 253
           NPLFEKR +NF IGQ IQP +D++
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVT 156


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G N  TK + +  +  +V+A D +P+E++L LP LC
Sbjct: 38  GANEATKTLNRGISEIIVMAADAEPLEILLHLPLLC 73


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -2

Query: 456 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 337
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   K ++K++AHF V+A + D  + V  +  LC
Sbjct: 42  GLHETCKALDKREAHFCVLAENCDEPQYVKLVETLC 77


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 329 LRSTNLPRHWTRLQLRA 379
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 234 SQLVTCPICKMAQVYPHPAPEGCTSASSESAPSDQ 338
           +Q + CP   M Q   +PA   C S+SS +A + Q
Sbjct: 139 AQRLPCPFAMMRQPCANPACVQCPSSSSNAAKNGQ 173


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 234 SQLVTCPICKMAQVYPHPAPEGCTSASSESAPSDQ 338
           +Q + CP   M Q   +PA   C S+SS +A + Q
Sbjct: 139 AQRLPCPFAMMRQPCANPACVQCPSSSSNAAKNGQ 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,134
Number of Sequences: 27780
Number of extensions: 214734
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)