Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0504
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    84   8e-17
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            83   1e-16
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    36   0.029
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    36   0.029
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    35   0.038
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    31   0.47 
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    31   0.81 
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    31   0.81 
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    30   1.4  
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)            29   2.5  
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)            29   2.5  
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)            29   2.5  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.3  
At3g46670.1 68416.m05066 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.3  
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    28   4.3  
At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4...    28   5.7  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   7.6  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 36/55 (65%), Positives = 46/55 (83%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 411
           L ++++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/37 (72%), Positives = 31/37 (83%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           G N VT L+E+ KA  VVIAHDVDPIELV++LPALCR
Sbjct: 129 GLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR 165



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLSNL*DGP-SISASSARRL 301
           NPLFE+RPK F IG  + P +DLS     P SI     +R+
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 35/55 (63%), Positives = 46/55 (83%)
 Frame = +1

Query: 247 LVQFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 411
           L ++++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/37 (72%), Positives = 31/37 (83%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALCR 620
           G N VT L+E+ KA  VVIAHDVDPIELV++LPALCR
Sbjct: 130 GLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR 166



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 182 NPLFEKRPKNFAIGQGIQPTRDLSNL*DGP-SISASSARRL 301
           NPLFE+RPK F IG  + P +DLS     P SI     +R+
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
           G N  TK + +  + FVV+A D +P+E++L LP L
Sbjct: 38  GANEATKTLNRGISEFVVMAADAEPLEILLHLPLL 72


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
           G N  TK + +  + FVV+A D +P+E++L LP L
Sbjct: 38  GANEATKTLNRGISEFVVMAADAEPLEILLHLPLL 72


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
           G N  TK + +  + F+V+A D +P+E++L LP L
Sbjct: 38  GANEATKTLNRGISEFIVMAADTEPLEILLHLPLL 72


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 519 TVTKLVEKKKAHFVVIAHDVDPIELVLFLPAL 614
           + TK + +  + FVV+A D +P+E++L LP L
Sbjct: 73  SATKTLNRGISEFVVMAADAEPLEILLHLPLL 104


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   KL+EK+ A  VV+A D +  + V  + ALC
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   KL+EK+ A  VV+A D +  + V  + ALC
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G   V K + + +    VIA ++ PI+++  LP LC
Sbjct: 54  GVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILC 89


>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   KL+EK+ A   V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   KL+EK+ A   V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GTNTVTKLVEKKKAHFVVIAHDVDPIELVLFLPALC 617
           G +   KL+EK+ A   V+A D +  + V  + ALC
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 507  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 349
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g46670.1 68416.m05066 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 462 NLSFSSFPQPLFPGCFS-LRPV-FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA 289
           +  F + P+ L    F  L P+ FL  L K    S   CLG+L+ ++G+    + Y    
Sbjct: 56  DFQFVTIPESLPESDFEDLGPIEFLHKLNKECQVSFKDCLGQLLLQQGNEIACVVYDEFM 115

Query: 288 LDADILGPSYKL 253
             A+     +KL
Sbjct: 116 YFAEAAAKEFKL 127


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 611 RWQEENQLNRINIMSDDHKVRLLLLDQLGDCVCADRM 501
           RW E NQ +R+  MSD  K + + L QL D  C  ++
Sbjct: 346 RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQCKPKI 381


>At4g16780.1 68417.m02535 homeobox-leucine zipper protein 4 (HAT4) /
           HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine
           zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466)
           [Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2
          Length = 284

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 240 LVTCPICKMAQVYPHPAPEGCTSASSESAP 329
           L  CP C+   V P P P+  TSA   S P
Sbjct: 233 LTMCPSCEHVSV-PPPQPQAATSAHHRSLP 261


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 468 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 373
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,657,407
Number of Sequences: 28952
Number of extensions: 209971
Number of successful extensions: 627
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)