Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 FMYLFISCDKGLDFFVFTL 455
           F+Y+F+S  K L FFV  L
Sbjct: 297 FIYMFVSVWKCLLFFVSVL 315


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 FMYLFISCDKGLDFFVFTL 455
           F+Y+F+S  K L FFV  L
Sbjct: 297 FIYMFVSVWKCLLFFVSVL 315


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 FMYLFISCDKGLDFFVFTL 455
           F+Y+F+S  K L FFV  L
Sbjct: 297 FIYMFVSVWKCLLFFVSVL 315


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 FMYLFISCDKGLDFFVFTL 455
           F+Y+F+S  K L FFV  L
Sbjct: 297 FIYMFVSVWKCLLFFVSVL 315


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 33  NLVHPILNKVKPKEKTPPPSNQTAGDGQA 119
           +LVH      +  E+ P P+ + AGD  A
Sbjct: 261 HLVHHKCGGEEEAERAPAPAVRAAGDAAA 289


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  NQTAGDGQADGNKDAPSTQSQEQ 161
           N+T G+G ++G  D  S Q   Q
Sbjct: 301 NKTKGEGGSEGGGDDISPQGSPQ 323


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  NQTAGDGQADGNKDAPSTQSQEQ 161
           N+T G+G ++G  D  S Q   Q
Sbjct: 303 NKTKGEGGSEGGGDDISPQGSPQ 325


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,624
Number of Sequences: 336
Number of extensions: 2626
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)