Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    27   2.1  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   2.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   8.6  

>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 372 SCTKLLQINFMYLFISCDKGLDFFVFTLR*LKYQYLVFK*VEFSLAIYTASS 527
           SCTK L + FM+  I+    + +  + L    Y YL  K +    ++Y+  +
Sbjct: 40  SCTKSLSVLFMHKLIAKVPHISYEGYRLTYAGYDYLALKALSKRASVYSVGN 91


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = +3

Query: 12  QERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE*THL*K 191
           QE + FEN+     ++ KPK + P   N  +   Q        S   + +      HL K
Sbjct: 4   QETKVFENVKQENPDEKKPKVEEPDSQNNASTQSQQKFLDFQLSWCPESERKTTKYHLLK 63

Query: 192 THNTKQ*HPPSSSFV 236
            H+ K    PS SFV
Sbjct: 64  FHSNKA-IDPSKSFV 77


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 83  WCFLFWFNFIQNWM 42
           W FL+W  F+ +W+
Sbjct: 120 WRFLYWLTFVLSWI 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,721
Number of Sequences: 5004
Number of extensions: 44308
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)