Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    29   3.8  
12_02_1193 + 26891619-26892456,26892545-26893884                       28   5.0  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    28   5.0  
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    28   5.0  
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616...    28   6.6  
03_02_0606 + 9802880-9803083                                           28   6.6  

>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 78  TPPPSNQTAGDGQADGNKDAP 140
           TPPP+NQTA    A  N  +P
Sbjct: 15  TPPPANQTAAPPPASNNSSSP 35


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 57  KVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
           K+ PK++  PPS+ +  D + D  +     + +E+ +VE
Sbjct: 347 KLAPKKRRVPPSSDSDADDEDDAEEHDGEEEREEEEEVE 385


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 67  QKRKHHLLPIRLRETDRLMVTRMRLRLNLKSKWMLNKRIFRKLTTLNNNTRLP 225
           +KRK         E+D+L+  R    L  K +W+   R +R L  L N  R P
Sbjct: 95  EKRKQKKSVFTSFESDKLINERFHDWLYHKCEWLRGPRHYRGLDLLQNGVRNP 147


>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 60  VKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMD 167
           +KP  K   PSN    +G ADG+  + +   Q Q+D
Sbjct: 179 IKPFVKLVTPSNNNPSNGHADGSCSSSTGLPQTQVD 214


>12_02_1147 -
           26459481-26460124,26460241-26460382,26461658-26461699,
           26463377-26463502
          Length = 317

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 69  KEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
           +EK     N+ A D +AD  K+APS  + ++ DVE
Sbjct: 142 QEKKEATENEEAKDAEAD--KEAPSEDAPKETDVE 174


>03_02_0606 + 9802880-9803083
          Length = 67

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  ILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQS 152
           I+  V  K   PP +++ AG G  DG  DA +  S
Sbjct: 28  IVQDVFGKSSDPPATSKPAGAGNGDGGDDAAAAGS 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,597
Number of Sequences: 37544
Number of extensions: 252056
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)