Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0503
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058) 29 2.2
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7) 29 2.9
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 28 6.7
SB_52475| Best HMM Match : Herpes_teg_N (HMM E-Value=2.3) 28 6.7
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_34265| Best HMM Match : rve (HMM E-Value=0.0015) 27 8.9
SB_9191| Best HMM Match : TolA (HMM E-Value=1) 27 8.9
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 27 8.9
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 15 ERQNFENLVHPILNKVKP-KEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
E+Q EN PILNK KP K+ PPP + A KD + ++ E+MD E
Sbjct: 1001 EKQQLENTCLPILNKPKPTKKPEPPPKEEDKKTEDAGAKKDGETVENAEKMDDE 1054
>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 502 ENSTHLNTKY*YFNYRNVNTKKSSPLSHEINKYIKFICNNLVQLSN 365
+N+ + +K + N N N KS E NK+ + C N+ +L N
Sbjct: 358 DNNGIMESKVLHLNQANENAYKSCRQLEEANKHFEKTCKNIEELKN 403
>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
Length = 1083
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 9 GQERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE*TH 182
GQE + E+L L+KVK + K + + + A N + + +SQ Q+D++ TH
Sbjct: 528 GQEIERMEDLKKE-LSKVKEQLKASETTIEDLQNQLATINTELAAVRSQSQLDIQQTH 584
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 499 NSTHLNTKY*YFNYRNVNTKKSSPLSHE-INKYIKFICNNLVQLSNITKIAQNLALFSIT 323
NST N + Y R+V K S LS + ++ Y+K N ++ +++ L F
Sbjct: 1476 NSTGNNPEAIYSKPRDVE-KASETLSEDALSSYVKSYLNRKIESITDAILSEKLKSFGPP 1534
Query: 322 KLKNNEIVI 296
LK N +V+
Sbjct: 1535 TLKENNVVV 1543
>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
Length = 348
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 177 FIQHPFALEIESKAHPCY-HQPVRLP 103
+ +HPF LE+E K CY + P R P
Sbjct: 258 YCKHPFRLELEGKHDKCYLNSPCRQP 283
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +3
Query: 66 PKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE*THL*KTHNTKQ 209
P K PP+NQ A G KD PS Q+ T K H KQ
Sbjct: 900 PASKKAPPNNQQA----KKGGKDQPSKQAGNTTPTRGTKQKKIHLNKQ 943
>SB_52475| Best HMM Match : Herpes_teg_N (HMM E-Value=2.3)
Length = 177
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 415 INKYIKFICNNLVQLSNITKIAQNLALFSITKLKNNEIVIIEGKYIIMS--HY 263
+N+Y FI L+ + K +Q LF NE+ I+ GK +S HY
Sbjct: 115 LNEYDMFIVRYLLYTIALFKTSQTWLLFDSHNRDQNELDILTGKPFFLSSKHY 167
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 66 PKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
P E+ PS + D +D DA TQS E+ DVE
Sbjct: 1221 PPEEPKGPSFEDVYDPISDDEFDAMYTQSDEEEDVE 1256
>SB_34265| Best HMM Match : rve (HMM E-Value=0.0015)
Length = 1069
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 129 CYHQPVRLPQSDWKEVVFSLLV*LYSKLDARGS 31
C +RLP+SDW + FSL +S D R S
Sbjct: 227 CNIAGLRLPKSDWNRIRFSLRSGYFSLRDWRPS 259
>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
Length = 541
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 66 PKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
P E+ PS + D +D DA TQS E+ DVE
Sbjct: 411 PPEEPKGPSFEDVYDPISDDEFDAMYTQSDEEEDVE 446
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 78 TPPPSNQTAGDGQADGNKDAPSTQSQE 158
TPPP+ + DG K PST S E
Sbjct: 791 TPPPATPLSSDGTGPHFKSGPSTPSVE 817
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,815
Number of Sequences: 59808
Number of extensions: 310820
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -