Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    36   0.030
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    29   3.4  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate trans...    27   7.9  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 23/54 (42%), Positives = 29/54 (53%)
 Frame = +3

Query: 12  QERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMDVE 173
           Q +  FEN+V+PILNK KP    PP   +      A G  D P +Q  E MDV+
Sbjct: 729 QNKNVFENVVNPILNKKKPAAPAPPKKEEPQ---PAAG--DQPQSQPGE-MDVD 776


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = -1

Query: 457 RNVNTKKSSPLSHEINKYIKFICNNLVQLSNITKIAQNLALFSITKLKNNEIVIIEGKYI 278
           +++NTK  +  S E++K    +   ++ +SN+ +I  +  LF I   ++ +I+ IE K +
Sbjct: 194 KSMNTKSKTSRSEEVSKISSILTILILLISNLVEIEMSFHLFDINLRRDFQILKIE-KSL 252

Query: 277 IMS 269
           IM+
Sbjct: 253 IMT 255


>Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical
           protein F52F12.5 protein.
          Length = 148

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 39  VHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPST 146
           V  + +KVKP     PP   T G G  DG +   ST
Sbjct: 107 VETVASKVKPASSRVPPIASTPGKGSVDGEQKKKST 142


>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 403 IKFICNNLVQLSNITKIAQNLALFSIT 323
           +  +C N++ + N+T+ AQ LA++ +T
Sbjct: 239 LSLVCKNIIDIDNLTETAQALAMYVVT 265


>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 66  PKEKTPPPSNQTAGDGQ-ADGNKDAPSTQSQEQM 164
           P E+ P PSN +A  GQ A   ++AP    +E+M
Sbjct: 631 PVEEAPGPSNASAAGGQEAMDTEEAPQEGGEEEM 664


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  ENLVHPILNKVKPKEKTPPPSNQTA 104
           ENL   ++N+V P   TPP   QTA
Sbjct: 555 ENLEKTMINQVPPVVNTPPSPQQTA 579


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  ENLVHPILNKVKPKEKTPPPSNQTA 104
           ENL   ++N+V P   TPP   QTA
Sbjct: 555 ENLEKTMINQVPPVVNTPPSPQQTA 579


>U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate
           transporter family protein6 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 394 ICNNLVQLSNITKIAQNLALFSIT 323
           IC NL++L +I+ IA  LAL+  T
Sbjct: 249 ICGNLLELDDISDIASVLALYVFT 272


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 3   APGQERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQ 161
           A G+++++ +N       K KPK+  PPP+   + D  +  N+    + S  Q
Sbjct: 828 AGGKKKKSKDNT----FGKQKPKQLLPPPTKGVSSDDDSQHNRSTAKSVSGRQ 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,818
Number of Sequences: 27780
Number of extensions: 249010
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)