Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 6   PGQE-RQNFENLVHPILNKVKPK 71
           PG   RQ FEN V+ ILN  + K
Sbjct: 190 PGNTLRQTFENQVNRILNDARDK 212


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 168 HP-FALEIESKAHPCYHQPVRLPQ 100
           HP    E ES+A P  ++PV +PQ
Sbjct: 85  HPRLRREAESEAEPGNNRPVYIPQ 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 472 NT*YSNELSFLSRFIQRVHSININ*QALHNAFMI 573
           N  + N  + LS F + +H+  +N +++HN + +
Sbjct: 560 NEQFLNTAATLS-FCEMIHNAQVNKRSIHNNYPV 592


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 57  YSKLDARGSQNSDVL 13
           YSK +   S NSDVL
Sbjct: 144 YSKSNGSNSSNSDVL 158


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 178 RIFRKLTTLNNNTRLPH 228
           ++FR L +LNN+  + H
Sbjct: 409 KVFRTLNSLNNHKSIYH 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,076
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)