Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0503
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2...    34   0.064
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2...    29   2.4  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   2.4  
At1g79930.1 68414.m09340 heat shock protein, putative contains P...    28   4.2  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   5.5  
At1g10940.1 68414.m01256 serine/threonine protein kinase, putati...    27   7.3  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    27   9.6  
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    27   9.6  
At1g47495.1 68414.m05271 hypothetical protein                          27   9.6  
At1g19430.1 68414.m02421 dehydration-responsive protein-related ...    27   9.6  

>At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2.6)
           plant glutamate receptor family, PMID:11379626
          Length = 906

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 118 LMVTRMRLRLNLKSKWMLNKRIFRKLTTLNNNTRLPHHSYRALDTII 258
           L +T       +++KW+L ++     TT ++  RL HHS+ AL TI+
Sbjct: 733 LNITEGETMKAIENKWLLGEKHCLDSTTSDSPIRLDHHSFEALFTIV 779


>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
           plant glutamate receptor family, PMID:11379626
          Length = 829

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 151 LKSKWMLNKRIFRKLTTLNNNTRLPHHSYRALDTII 258
           +++KW L ++     TT ++  +L HHS+ AL  I+
Sbjct: 727 IENKWFLGEKHCLDSTTSDSPIQLDHHSFEALFLIV 762


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 61   LNQKRKHHLLPIRLRETDRLMVTRMRLRLNLKSKWMLNKRIFRKLTTLNN 210
            +NQK KH L P+ +++    +  +     NL+S++  N++ F  L   NN
Sbjct: 1208 INQKEKHALFPVAIKDVPTKIEDKDN---NLESEFFHNRQAFLNLCQGNN 1254


>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
           profile: PF00012 Heat shock hsp70 proteins; similar to
           heat-shock proteins GB:CAA94389, GB:AAD55461
           [Arabidopsis thaliana]
          Length = 831

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 30  ENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAP-STQSQEQMDVE 173
           +    PI+ K KP  K   P  Q  G  QAD  K  P    S E M+ E
Sbjct: 778 DKFCRPIMTKPKPVAKAEAP--QAKGGEQADEGKSEPEQPASAEPMETE 824


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor, Homo
           sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1793

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +3

Query: 3   APGQERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAP 140
           A  ++     N    ++ ++   +K+PPPS+  A D +++ +   P
Sbjct: 25  ASWRKHSKLANECKAVIERLNSLQKSPPPSSSAATDSESESSVPGP 70


>At1g10940.1 68414.m01256 serine/threonine protein kinase, putative
           similar to serine/threonine-protein kinase ASK1
           [Arabidopsis thaliana] SWISS-PROT:P43291
          Length = 363

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +3

Query: 57  KVKPKEKTPPPSNQT------AGDGQADGNKDAPSTQSQEQMDVE 173
           K+    KTPPP +++       G+G ADG ++      +E+ +VE
Sbjct: 294 KIVADAKTPPPVSRSIGGFGWGGNGDADGKEEDAEDVEEEEEEVE 338


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 153 EIESKAHPCYHQPVRLPQSDWKEVV 79
           E+E KA  CY  P+ L ++++ E++
Sbjct: 178 ELEEKARACYEGPISLSRNEFTEML 202


>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 33  NLVHPILNKVKPKEKTPPPS 92
           NL  P++ +  PK K PPP+
Sbjct: 339 NLTPPVIKRAPPKVKQPPPT 358


>At1g47495.1 68414.m05271 hypothetical protein
          Length = 142

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 55  IKLNQKRKHHLLPIRLR-ETDRLMVTRMRLRLNLKSKWMLNKRIFRKLTTLNN 210
           +K    +KHHL+ +R++ + D      +RL+  +   W  + R+  K  TL +
Sbjct: 21  VKFKHAKKHHLMKLRIQLKQDGEGSRLLRLQHGVSFCWKNSARLLSKKRTLTS 73


>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
           similarity to early-responsive to dehydration stress
           ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 724

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 12  QERQNFENLVHPILNKVKPKEKTPPPSNQTAGDGQADGNKDAPSTQSQEQMD 167
           QE +  E+      NK   +E T    N+   DG  DG+ D  S    E+++
Sbjct: 140 QEHEEAESDDSDQSNKEDGEEGTESDGNEGESDGNGDGSVDDSSASVDEEVE 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,716,360
Number of Sequences: 28952
Number of extensions: 215682
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)