Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0502
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 62   WGFDCDSGKATDRS 21
            W  DC+ G A+D+S
Sbjct: 1950 WQVDCNKGPASDKS 1963


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 288 AASPAKTASELPAQTSKPRHP 350
           A SP+ T S LP Q +   +P
Sbjct: 74  APSPSSTPSSLPTQRTSTSNP 94


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 422 AAVSPRPRHWAPAPERTLA*PATQRV 345
           A+V P PRH+ P P   L  P  Q V
Sbjct: 26  ASVQPLPRHFNP-PSDKLHHPIHQTV 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,517
Number of Sequences: 336
Number of extensions: 2146
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)