Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0502
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 40 3e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 36 0.004
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 33 0.040
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.0
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 2.6
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.6
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 26 4.6
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 25 6.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 8.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 84 QCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCVLCRTQGH-PANT 257
+C+NC GH +R C C C H + CT Q+ T C C T GH +
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAGHLVRDC 73
Query: 258 ADAPEPRK 281
+P PR+
Sbjct: 74 PSSPNPRQ 81
Score = 34.7 bits (76), Expect = 0.010
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCTRDQKTATEPPSCVLCRTQGHPANTA 260
C+ C YGH +R+C +C C +G H + C + A++ C C GH A
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIG-HRSFEC----QQASDGQLCYKCNQPGHIAVNC 172
Query: 261 DAP 269
+P
Sbjct: 173 TSP 175
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEP---PSCVLCRTQGHPA 251
S C+NC GH + C + C RD ++ P C C GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC--LGDHATALCTRDQKTATEPPSCVLCRTQGHPANTA 260
CHNC+ GH S++C C C + DH + C +K C+ C GH A A
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKK-------CMNCGLLGHIA--A 138
Query: 261 DAPEPRK 281
EPRK
Sbjct: 139 RCSEPRK 145
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 32.7 bits (71), Expect = 0.040
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 246 PANTADAPEPRK*IAASPAKTASELPAQTSKP 341
PA+T+ P+ AA+PA T + PAQTS P
Sbjct: 105 PASTSSTPKVETAAAAAPAATPAPAPAQTSAP 136
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 189 DQKTATEPPSCVLCRTQG-HPANTADAPEP 275
DQ + SC LCRT+G A+T +P+P
Sbjct: 554 DQWLTSSQNSCPLCRTKGVASASTPSSPKP 583
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 57 TPHKKGTPSQCHNCQLYGHSSRNCHARPR 143
T ++KG C NC H ++C RPR
Sbjct: 106 TKYRKGA---CENCGAMSHKVKDCMERPR 131
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 90 HNCQLYGHSSRNCHARPRCVKCL 158
HN ++ G +S+ H RP + CL
Sbjct: 38 HNGEIVGGASKTKHGRPWSISCL 60
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +1
Query: 31 VAFPESQSKPHTRKAHLASAIT-------ANYTGILPVTVTRAPDASSA*AI 165
VA P KPHT + + AS+++ + + I VT PD++ A A+
Sbjct: 484 VAPPAENEKPHTSRTNTASSLSSTSEDQVSTHGSISSAKVTAIPDSNGAEAL 535
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 328 WAGSSEAVLAGDAAIYFRGSGASAVFAG 245
W G V+AGD A+Y +G+ AG
Sbjct: 137 WDGRDGIVVAGDIALYAKGNARPTGGAG 164
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 275 PKINRRVARQNRLRASGPDIKASAPSV 355
P + R R+ + SGPD A P+V
Sbjct: 33 PPVPTRTGRRKKKAQSGPDASAKLPTV 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,363
Number of Sequences: 5004
Number of extensions: 33031
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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