Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0502
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 36 0.031
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 33 0.16
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 32 0.29
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 32 0.38
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 32 0.38
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 32 0.38
10_05_0023 + 8171023-8171782,8172658-8172950 31 0.66
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 31 0.88
12_02_0230 + 15973390-15974645,16002878-16003097 29 2.0
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 2.0
05_06_0086 - 25447063-25447182,25448082-25448702 29 2.0
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 29 2.0
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 3.5
11_06_0690 + 26303733-26306540 28 4.7
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 28 4.7
01_06_1631 - 38760452-38760466,38760696-38760788,38760838-38761539 28 4.7
01_06_1439 + 37374739-37375473 28 4.7
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 28 6.2
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 6.2
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 28 6.2
02_02_0438 + 10261084-10262061,10265049-10265690 28 6.2
12_01_0026 + 219663-220843,222201-222447,222574-224535 27 8.2
11_01_0026 + 193383-194566,195726-195972,196099-198063 27 8.2
09_02_0546 - 10454404-10455687 27 8.2
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 27 8.2
06_03_0046 - 15852653-15854560 27 8.2
01_07_0026 + 40576826-40577114,40577210-40577354,40577736-405778... 27 8.2
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 35.5 bits (78), Expect = 0.031
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +3
Query: 141 RCVKCLG-DHATALCTRDQKTATEPPSCVLCRTQGHPANTA----DAPEPRK*IAASPAK 305
RC +CLG H A C+ +PP+C C GH DA PRK AA+ K
Sbjct: 70 RCFRCLGLGHLKASCS-------QPPTCYRCWYPGHIERNCKVDIDATLPRKVPAAAAPK 122
Query: 306 TASELPAQTS 335
L A TS
Sbjct: 123 RPQHLAASTS 132
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 192 QKTATEPPSCVLCRTQGHPANTADAPEPRK*IAASPAKTASELPAQTSKPR 344
++ A P S LC + +T+ +P PR + ASP+ A L + S+PR
Sbjct: 4 RRLARSPSSRSLCAPRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSRPR 54
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTR 188
C+NC+ GH +RNC P C C + H C +
Sbjct: 143 CNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPK 177
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCVLCRTQGHPANT 257
C+NC+ GH +R+C C C L H A C + C C+ GH AN+
Sbjct: 41 CNNCKRPGHFARDCPNVALCHACGLPGHIAAEC-------SSKDLCWNCKEPGHMANS 91
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = +3
Query: 30 CSLSG-IAVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTA 203
C L G IA E K C NC+ GH + +C C C H C+
Sbjct: 63 CGLPGHIAAECSSK----DLCWNCKEPGHMANSCPNEGICRNCGKSGHIARECSAPPMLP 118
Query: 204 TEPPSCVLCRTQGHPA 251
E C C GH A
Sbjct: 119 GEMRLCSNCYKPGHLA 134
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPR-------CVKCL-GDHATALCTRDQKTATEPPSCVLCRTQG 242
C NC GH +R C A P C C H A CT ++ +C CR G
Sbjct: 98 CRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEK-------ACNNCRKSG 150
Query: 243 HPA 251
H A
Sbjct: 151 HLA 153
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCVLCRT 236
P G C NC GH + C C C H C + P C LC
Sbjct: 115 PMLPGEMRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNE-------PVCNLCNV 167
Query: 237 QGHPA 251
GH A
Sbjct: 168 SGHLA 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCL-GDHATALCTRDQKTATEPPSCVLCRTQGHPANTAD 263
CH C L GH + C ++ C C H C + C C GH A
Sbjct: 60 CHACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNE-------GICRNCGKSGHIARECS 112
Query: 264 AP 269
AP
Sbjct: 113 AP 114
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 144 CVKCLGDHATALCTRDQKTATEPPSCVLCRTQGHPANTADAPEPRK*IAASPAK 305
CVKC D + + + D C LCRT T AP P +A SPA+
Sbjct: 312 CVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASFRTTAAPPPPS-LAGSPAR 364
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +3
Query: 87 CHNCQLYGHSSRNC------HARPRCVKC-LGDHATALCTRD-QKTATEPPSCVLCRTQG 242
C C+ GHS +NC + + C C H+ + C + + T+ SC +C+ QG
Sbjct: 97 CLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQG 156
Query: 243 H 245
H
Sbjct: 157 H 157
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 84 QCHNCQLYGHSSRNCHA---RPRCVKCLGD--HATALCTRDQKTATEPPSCVLCRTQGHP 248
+C NC + GH +R+C A + +C +C G+ H C + + S L G P
Sbjct: 150 RCFNCGIDGHWARDCKAGDWKNKCYRC-GERGHIERNCQNSPRNLSRSRSRSL---SGSP 205
Query: 249 ANTADAPEPR-K*IAASPAKTASELPAQTSKPRHP 350
D + R + ++ S + S PA K R+P
Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNP 240
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 31.1 bits (67), Expect = 0.66
Identities = 25/76 (32%), Positives = 30/76 (39%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGHPANTADA 266
C C GH + C C C DH C T +C LC GH A+
Sbjct: 213 CTRCGEIGHVASMCLTL--CTHCEEDHPPGECP------TRKVTCFLCEGMGHFAD--KC 262
Query: 267 PEPRK*IAASPAKTAS 314
P PR IAAS + A+
Sbjct: 263 PRPRN-IAASTSVHAT 277
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 236 TGSPRKYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQ 361
+GSP YRG P++ +R A +++ R+ PD ++ A S S+
Sbjct: 53 SGSPSPYRGNPKSRSRSRSPAARSQSRSPVPDPRSQARSRSR 94
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 VLCRTQGHPANTAD-APEPRK*IAASPAKTASELPAQTSKPRH 347
V+C G P + AD P+PR+ + PA++ S +PA ++ H
Sbjct: 80 VVCFNCGDPGHYADKCPKPRR-VKVVPAQSNSTVPASKARVNH 121
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 VLCRTQGHPANTAD-APEPRK*IAASPAKTASELPAQTSKPRH 347
V+C G P + AD P+PR+ + PA++ S +PA ++ H
Sbjct: 528 VVCFNCGDPGHYADKCPKPRR-VKVVPAQSNSAVPASKARVNH 569
>05_06_0086 - 25447063-25447182,25448082-25448702
Length = 246
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 409 PGRDTGHRRRNERW-LSLRHRGCRGFDVWAGSSEAVLAGDAA 287
P R R RW LS+ H G D W GS A +AA
Sbjct: 52 PARARRRRTTAARWRLSVAHPGAEAADAWGGSGVAGPCAEAA 93
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCL-GDHATALCTRDQKTATEP 212
C C GH + NC RC CL H + C A +P
Sbjct: 230 CVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFCATRPTKAHQP 272
>05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARP----RCVKC-LGDHATALCTRDQKTATEPPSCVLCRTQGH 245
S+C+ C+ GH +R+C + C KC H + C +E C C+ GH
Sbjct: 924 SECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSE---CFKCKQPGH 980
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEP 212
P + +C C GH +C PRC +C + C D+ ++ P
Sbjct: 85 PIPRWLQGRCFCCLGLGHLKADCKGAPRCYRCWFSGYLERDCKFDRGPSSRP 136
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 388 RRRNERWLSLRHRGCRGFDVWAGSSEAVLAGDAAI-YFRGSGASAVFAG*PCVRHRTQLG 212
RRR ++W R R C G W ++ A + GD I G A +F P R +
Sbjct: 152 RRRRQQWRRRRTRSC-GRTGWHNATVATVIGDGRIALLSGISAQDLFVWFPVYGIRVDVP 210
Query: 211 GSVAVF 194
S ++
Sbjct: 211 CSSVIY 216
>01_06_1631 - 38760452-38760466,38760696-38760788,38760838-38761539
Length = 269
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 349 GCRGFDVWAGSSEAVLAGDAAIY 281
GCR DV+ ++EA+ GDA +Y
Sbjct: 245 GCRLDDVFGNATEAISTGDANVY 267
>01_06_1439 + 37374739-37375473
Length = 244
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 213 PSCVLCRTQGHPANTADAPEPRK*IAASPAKTASELPAQTSKPRH 347
PSC RTQ A TA P P AS ++E TS RH
Sbjct: 36 PSCKNPRTQSFRAATAPPPPPGSRTIASIFLDSAESSFTTSSARH 80
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEP 212
C NC GH C RC C H C + +P
Sbjct: 132 CFNCLGLGHQKSACPGSTRCYNCWYSGHIARNCPTSRAARAQP 174
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLG 161
C NC + GH RNC A +C G
Sbjct: 110 CFNCGMEGHWHRNCTAGDWTNRCYG 134
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 VLCRTQGHPANTAD-APEPRK*IAASPAKTASELPAQTSKPRH 347
V+C G P + AD P+PR+ + P ++ S +PA ++ H
Sbjct: 307 VVCFNCGDPGHYADKCPKPRR-VKVVPTQSNSTVPASKARVNH 348
>02_02_0438 + 10261084-10262061,10265049-10265690
Length = 539
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 95 LPIIRAFFP*LSRAPPMRQVLRRS-RHGPM 181
LP+I + L +PP R +LR S RHGP+
Sbjct: 64 LPVIGSLHHLLGASPPHRALLRLSRRHGPL 93
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 18 IRTVCSLSGIAVETPHKKGTPSQCHNCQLYG 110
+ T+ S SGI E H+ G PS N + G
Sbjct: 437 VATIISASGITAEDHHQGGLPSLLQNGSMMG 467
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 18 IRTVCSLSGIAVETPHKKGTPSQCHNCQLYG 110
+ T+ S SGI E H+ G PS N + G
Sbjct: 438 VATIISASGITAEDHHQGGLPSLLQNGSMMG 468
>09_02_0546 - 10454404-10455687
Length = 427
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGHP-ANTAD 263
C NCQ GH + C HAT C +QK A P V+ ++ P A A
Sbjct: 311 CFNCQGMGHFADKCPKPRNIAASTSVHATP-C--NQKLA--PQRIVIHASRSSPIARVAT 365
Query: 264 APEP 275
AP P
Sbjct: 366 APTP 369
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHAR 137
P +C C +GH++R C AR
Sbjct: 19 PRRCSQCGHHGHNARTCTAR 38
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARP 140
P CH+C GH +R C RP
Sbjct: 245 PVWCHSCLEAGHMARFCATRP 265
>01_07_0026 +
40576826-40577114,40577210-40577354,40577736-40577801,
40578012-40578021
Length = 169
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 421 QRFRPGRDTGHRRRNERWLSLRHRGCR 341
+R RPGR GH ++ R RGC+
Sbjct: 12 ERRRPGRSPGHDGEQQQQQDGRRRGCK 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,135
Number of Sequences: 37544
Number of extensions: 296374
Number of successful extensions: 1130
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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