Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0502
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 37 0.012
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.027
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 35 0.048
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 35 0.048
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 34 0.063
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 34 0.063
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.11
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.11
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.11
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 33 0.11
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 33 0.11
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.11
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 33 0.19
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 1.8
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 1.8
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 1.8
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.2
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 4.2
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 28 4.2
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 4.2
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 4.2
Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 27 9.6
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPR-CVKCLGDHATALCTRDQKTATEPPS 218
C C GH C +RPR C C G+H T C + AT P+
Sbjct: 348 CFGCLRSGHQRSKC-SRPRTCNHCKGNHHTVFCQSHNRNATRNPN 391
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.027
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Frame = +3
Query: 33 SLSGIAVETPHKKGTPSQ---CHNCQLYGHSSRNCHARPRCVKCLGD--HATALCTRDQK 197
S IAV H K T SQ CHNC GH + C P + D H L K
Sbjct: 187 SFENIAVS--HAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDK 244
Query: 198 TATEPPSCVLCRTQGHPAN 254
+C C +GH AN
Sbjct: 245 KNLSDVTCYKCGEKGHYAN 263
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.048
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 72 GTPSQCHNCQLYGHSSRNCHARPR-CVKCLGD--HATALCTRDQKTATEPPSCV 224
G + C NC+ YGH + C A R C C GD H C K + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANC-GDPNHRANECASWSKNGVQEPTKV 251
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.048
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 72 GTPSQCHNCQLYGHSSRNCHARPR-CVKCLGD--HATALCTRDQKTATEPPSCV 224
G + C NC+ YGH + C A R C C GD H C K + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANC-GDPNHRANECASWSKNGVQEPTKV 251
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 34.3 bits (75), Expect = 0.063
Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHAR--PR--CVKC--LGDHATALCTRDQKTATEPPSCVLCRTQ 239
P CHNC GH S+ C PR C C LG H + C DQ P C C +
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLG-HFASDC--DQPRVPRGP-CRNCGIE 624
Query: 240 GHPANTADAPE-PR 278
GH A D P+ PR
Sbjct: 625 GHFAVDCDQPKVPR 638
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Frame = +3
Query: 12 FNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSSRNCH----ARPRCVKCLGDHATAL 179
F R L A + + C NC + GH + +C R C C + A
Sbjct: 593 FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAK 652
Query: 180 CTRDQKTATEPPS-CVLCRTQGH 245
++++ EP C C +GH
Sbjct: 653 DCQNERVRMEPTEPCRRCAEEGH 675
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 34.3 bits (75), Expect = 0.063
Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHAR--PR--CVKC--LGDHATALCTRDQKTATEPPSCVLCRTQ 239
P CHNC GH S+ C PR C C LG H + C DQ P C C +
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLG-HFASDC--DQPRVPRGP-CRNCGIE 624
Query: 240 GHPANTADAPE-PR 278
GH A D P+ PR
Sbjct: 625 GHFAVDCDQPKVPR 638
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Frame = +3
Query: 12 FNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSSRNCH----ARPRCVKCLGDHATAL 179
F R L A + + C NC + GH + +C R C C + A
Sbjct: 593 FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAK 652
Query: 180 CTRDQKTATEPPS-CVLCRTQGH 245
++++ EP C C +GH
Sbjct: 653 DCQNERVRMEPTEPCRRCAEEGH 675
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNC-----HARPR-CVKC-LGDHATALCTRDQK 197
+ C NCQ GH S +C PR C C H + CT ++K
Sbjct: 158 NNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNC-----HARPR-CVKC-LGDHATALCTRDQK 197
+ C NCQ GH S +C PR C C H + CT ++K
Sbjct: 158 NNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRGCFNC 267
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNC-----HARPR-CVKC-LGDHATALCTRDQK 197
+ C NCQ GH S +C PR C C H + CT ++K
Sbjct: 158 NNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 60 PHKKGTPSQCHNCQLYGHSSRNC 128
P K+ P C+NCQ GH+SR+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCHARPR-CVKC 155
P +C NC+ GH S C PR C C
Sbjct: 452 PMKCFNCKGEGHRSAECPEPPRGCFNC 478
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 PVTVTRAPDASSA*AITPRPYALAIKKPRQNRLAASCVE-HRVTPQIPRM 264
P V APD +S TP+P A+ P L A+ E H+ P +PR+
Sbjct: 259 PSPVPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVLPRV 308
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQ 194
C NC H + C + C C+G H + C + +
Sbjct: 731 CANCLNPHHDIKKCRSYRSCAYCMGKHHSGACPKKE 766
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 57 TPHKKGTPSQCHNCQLYGHSSRNCHARPR 143
T +KG C NC GH R+C RPR
Sbjct: 108 TKFRKGA---CENCGAMGHQKRDCFDRPR 133
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1055 PYDCTPCPCPG 1065
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQ 194
C NC H C + C C+G H + C + +
Sbjct: 692 CANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKE 727
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 69 KGTPSQCHNCQLYGHSSRNC 128
+G P C +CQ +GH SR C
Sbjct: 164 RGGPGHCFHCQEHGHISRMC 183
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Frame = +3
Query: 66 KKGTPSQCHN------CQLYGHSSRNCHARPRCVKCLGDHATALCTRDQK------TATE 209
++GTP+ C C HS R C + RC+ C + C R +K T
Sbjct: 994 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1053
Query: 210 PPSCVLCRTQG 242
P C C G
Sbjct: 1054 PYDCTPCPCPG 1064
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQ 194
C NC H C + C C+G H + C + +
Sbjct: 692 CANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKE 727
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 72 GTPSQCHNCQLYGHSSRNC 128
G S C+NCQ GH SR+C
Sbjct: 32 GGGSTCYNCQETGHFSRDC 50
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 87 CHNCQLYG-HSSR--NCHARPRCVKCLG-DHATALCTRDQKTATE 209
C C L+ HSS+ NC P C+ LG + L T++Q+T E
Sbjct: 49 CQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEE 93
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 87 CHNCQLYG-HSSR--NCHARPRCVKCLG-DHATALCTRDQKTATE 209
C C L+ HSS+ NC P C+ LG + L T++Q+T E
Sbjct: 49 CQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEE 93
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALC 182
++C C HSS C++ +C C G H A C
Sbjct: 648 NRCAVCAGERHSSSMCYSTLKCTYCSGRHHPAGC 681
>Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical
protein C38D9.2 protein.
Length = 593
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 48 AVETPHKKGTPSQCHNCQLYGHSSRNC 128
A+ET K+ T S C C LY H+S C
Sbjct: 470 AIETTIKR-TESTCTFCGLYNHTSEKC 495
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 264 APEPRK*IAASPAKTASELPAQTSKPRHP 350
APEP A +PA A+ +PAQ + P P
Sbjct: 194 APEPAPEAAPAPAPEAAPVPAQDAAPAAP 222
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = +3
Query: 66 KKGTPSQCHNCQLYGHSSRNCHARPR------CVKCLG-DHATALCTRDQKTATEPPSCV 224
+K T S C +C+ GH +C R C KC +H+ C + +C
Sbjct: 224 QKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCF 283
Query: 225 LCRTQGH 245
+C+ GH
Sbjct: 284 VCKQVGH 290
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 84 QCHNCQLYGHSSRNC 128
QCH C+ GH +RNC
Sbjct: 575 QCHYCKNVGHMARNC 589
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 221 RPVSNTGSPRKYRGCPRAPKINRRVARQNRLRASGPDIKASAPSV 355
RP N G PR RAP+I +R R S + AP+V
Sbjct: 287 RPAPNFGKPRAAVAPARAPQITQRAPAATRPATSAIRVIPIAPNV 331
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 28.3 bits (60), Expect = 4.2
Identities = 27/103 (26%), Positives = 38/103 (36%)
Frame = +2
Query: 47 RSRNPTQERHT*PVP*LPIIRAFFP*LSRAPPMRQVLRRSRHGPMHSRSKNRDRTA*LRP 226
R + R P P RA P P R+ S P+ S + + + RP
Sbjct: 235 RPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA--PSPKAPVASVAPVKPKPFVARP 292
Query: 227 VSNTGSPRKYRGCPRAPKINRRVARQNRLRASGPDIKASAPSV 355
+ G PR RAP+I +R R S + AP+V
Sbjct: 293 APSFGKPRAAVAPARAPQITQRAPAATRPSTSAIRVTPIAPNV 335
>Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical
protein C17E4.3 protein.
Length = 431
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 13 STSERSVAFPESQSKPHTRKAHLASAITANY-TGILPVTVTRAPDASSA*AITPRPYALA 189
ST S PES S+ RK H ++ +++ TG++ + A ++ +TP P +L+
Sbjct: 331 STRRESGISPESSSRRDMRKTHSVYSVCSSFGTGVMSCSTPVAD--NNLRTLTPSPISLS 388
Query: 190 IKK 198
K
Sbjct: 389 TFK 391
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 141 RCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGHPANTADAPE 272
RC +CLG H+ C R ++ + SC + +N+ PE
Sbjct: 482 RCTRCLGKHSFQTCRR-VESHDQSRSCDRSPSHSKDSNSYTPPE 524
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,499
Number of Sequences: 27780
Number of extensions: 213766
Number of successful extensions: 725
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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