Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0502
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 38 0.005
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 31 0.56
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 0.73
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 0.73
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 31 0.73
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 31 0.73
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 30 0.97
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 1.7
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 1.7
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 1.7
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 2.2
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 2.2
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 2.2
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 3.0
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 3.0
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 3.0
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g56840.1 68418.m07092 DNA-binding family protein contains Pfa... 28 3.9
At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 27 6.8
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 27 6.8
At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ... 27 6.8
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 27 9.0
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 27 9.0
At1g49730.3 68414.m05576 protein kinase family protein contains ... 27 9.0
At1g49730.2 68414.m05577 protein kinase family protein contains ... 27 9.0
At1g49730.1 68414.m05575 protein kinase family protein contains ... 27 9.0
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +3
Query: 24 TVCSLSGIAVETPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKT 200
+VC+ G+ + S+C NC+ GH + NC C C H C+
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 201 ATEPPSCVLCRTQGHPA 251
A + C C QGH A
Sbjct: 134 AGDLRLCNNCFKQGHLA 150
Score = 35.5 bits (78), Expect = 0.026
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCVLCRTQGHPAN 254
C+NC+ GH +R+C C C L H A CT + + C CR GH A+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESR-------CWNCREPGHVAS 106
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCL-GDHATALCTRDQKTATEPPSCVLCRTQGHPANT 257
S C+NC L GH + C A RC C H + C+ + C C GH A
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNE-------GICHSCGKSGHRARD 126
Query: 258 ADAPEPR 278
+ R
Sbjct: 127 CSNSDSR 133
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCV 224
C NC+ GH +R+C P C C + H C + ++ S V
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRV 205
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 87 CHNCQLYGHSSRNCHARPRCVKC-LGDHATALCTRDQKTATEPPSCVLCRTQGHPA 251
C+NC GH + +C C C H C D P C +C GH A
Sbjct: 140 CNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRND-------PVCNICSISGHVA 188
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Frame = +3
Query: 87 CHNCQLYGHSSRNC-------HARPRCVKCLGD--HATALCTRDQKT-ATEPPSCVLCRT 236
C C+ GHS +NC + C C GD H+ + C + T+ SC +C+
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNC-GDTGHSLSHCPYPMEDGGTKFASCFICKG 159
Query: 237 QGH 245
QGH
Sbjct: 160 QGH 162
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 0.73
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +2
Query: 107 RAFFP*LSRAPPMRQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKIN 286
R+ P SR+PP R+ RRSR SR R++ R S R Y R + +
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRS-----RSYDRRERHEEKD 177
Query: 287 RRVARQNRLRASGPDIK 337
R R+ R R++ PD K
Sbjct: 178 RDHRRRTRSRSASPDEK 194
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 0.73
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +2
Query: 107 RAFFP*LSRAPPMRQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKIN 286
R+ P SR+PP R+ RRSR SR R++ R S R Y R + +
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRS-----RSYDRRERHEEKD 177
Query: 287 RRVARQNRLRASGPDIK 337
R R+ R R++ PD K
Sbjct: 178 RDHRRRTRSRSASPDEK 194
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +3
Query: 72 GTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGH 245
G+ C C+LY H ++ C DH L + T + +C LC Q H
Sbjct: 148 GSSYSCLGCELYFHVGCIHLSKEVNHPCHSDHPLMLVESESLTDNDKKTCFLCGQQPH 205
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +2
Query: 116 FP*LSRAPPMRQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKINRRV 295
FP L PP V+RR R S S++ R + SP + PRA + +
Sbjct: 108 FPSLDDQPPAASVVRRGRPQSQISLSRSSTMEKSRRSSKGSASPNRLSTSPRADNMQQIR 167
Query: 296 ARQNRLRASGP 328
R + R P
Sbjct: 168 GRPSSARHPSP 178
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 30.3 bits (65), Expect = 0.97
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Frame = +3
Query: 69 KGTPSQCHNCQLYGHSSRNC-------HARPRCVKCLG-DHATALCTRDQKTATEPPS-- 218
KGT C NC GH C + RC C G H C + + T+ S
Sbjct: 260 KGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 219 ---CVLCRTQGHPANTADAP 269
C +C +GH + T P
Sbjct: 320 YHKCGICGERGHNSRTCRKP 339
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 146 RQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKINRRVARQNRLRASG 325
R+ R G +S+S++R R R VS + S + R K +RR ++ R+ G
Sbjct: 198 RKDSRSPSRGRSYSKSRSRSRG---RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 326 PDIKASAPS 352
P K+ +PS
Sbjct: 255 PRSKSRSPS 263
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 146 RQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKINRRVARQNRLRASG 325
R+ R G +S+S++R R R VS + S + R K +RR ++ R+ G
Sbjct: 198 RKDSRSPSRGRSYSKSRSRSRG---RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 326 PDIKASAPS 352
P K+ +PS
Sbjct: 255 PRSKSRSPS 263
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 146 RQVLRRSRHGPMHSRSKNRDRTA*LRPVSNTGSPRKYRGCPRAPKINRRVARQNRLRASG 325
R+ R G +S+S++R R R VS + S + R K +RR ++ R+ G
Sbjct: 198 RKDSRSPSRGRSYSKSRSRSRG---RSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 326 PDIKASAPS 352
P K+ +PS
Sbjct: 255 PRSKSRSPS 263
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 87 CHNCQLYGHSSRNC----HARPRCVKCLG-DHATALCTRDQKTATEPPSCVLCRTQGHPA 251
C++C GH+S NC R C C +H C++ C +C+ GH A
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGH-------DCYICKKTGHRA 220
Query: 252 NTADAPEPRK 281
D P+ K
Sbjct: 221 K--DCPDKYK 228
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Frame = +3
Query: 21 RTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSSRNCHARPR-------CVKCLGD--HAT 173
R C + G + C+ C+ GH +++C + + C++C GD H
Sbjct: 188 RKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRC-GDFGHDM 246
Query: 174 ALCTRD-QKTATEPPSCVLCRTQGH 245
LC + K + C +C++ GH
Sbjct: 247 ILCKYEYSKEDLKDVQCYICKSFGH 271
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 131 RAPPMRQVLRRSRHGPMHSRSKNRDRTA*LR----PVSNTGSPRKYRGCPRAPKINRRVA 298
R+PP R +RR P+ ++R + R P G Y P +I R+++
Sbjct: 315 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKIS 374
Query: 299 R 301
R
Sbjct: 375 R 375
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 131 RAPPMRQVLRRSRHGPMHSRSKNRDRTA*LR----PVSNTGSPRKYRGCPRAPKINRRVA 298
R+PP R +RR P+ ++R + R P G Y P +I R+++
Sbjct: 322 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKIS 381
Query: 299 R 301
R
Sbjct: 382 R 382
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGH 245
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 80 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 134
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGH 245
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 91 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 145
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +3
Query: 81 SQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCRTQGH 245
++C+ C GH RNC P+ ++ G ++ + PS L R++ +
Sbjct: 121 NKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSY 175
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNCH-------ARPRCVKCLGD-HATALCTRDQKTATEPPS-CVLC 230
P C+ C GH +R+CH A C C + H + C + P C C
Sbjct: 33 PRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Query: 231 RTQGHPAN 254
Q H N
Sbjct: 93 GNQDHRFN 100
>At5g56840.1 68418.m07092 DNA-binding family protein contains Pfam
domains, PF00249: Myb-like DNA-binding domain and
PF00098: Zinc knuckle
Length = 233
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 84 QCHNCQLYGHSSRNCHA-RPRCVKCLGDHATALCTRDQKTATEPPSCVL 227
+C +C GH+SR C + + R V+ G H L T PP +L
Sbjct: 4 RCSHCGNVGHNSRTCSSYQTRVVRLFGVH---LDTTSSSPPPPPPPSIL 49
>At2g42350.1 68415.m05241 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 217
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 204 TEPPSCVLCRTQGHPANTADAPEPRK 281
T +C +CRT+ P++ PEPR+
Sbjct: 133 TTQSTCPVCRTEAEPSHPRLEPEPRE 158
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNC 128
P +C NC Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 78 PSQCHNCQLYGHSSRNC 128
P +C NC Y HS R C
Sbjct: 195 PPRCFNCGAYSHSIREC 211
>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 367
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 219 CVLCRTQGHPANTADAPEPRK*IAASPAKTASELPAQTSKP 341
C LC+ H A+ AP P+ A SP P Q P
Sbjct: 36 CALCQAVTHIADPRTAPPPQPSSAPSPPPQIHAPPGQLPHP 76
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 69 KGTPSQCHNCQLYGHSSRNC 128
KGT +C C+ GH +R+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 69 KGTPSQCHNCQLYGHSSRNC 128
KGT +C C+ GH +R+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g49730.3 68414.m05576 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 394
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 75 TPSQCHNCQLYGHSSRNCHA--RP--RCVKCLGDHATAL 179
T +Q H +GH SRNC P +C KCL T L
Sbjct: 67 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 105
>At1g49730.2 68414.m05577 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 450
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 75 TPSQCHNCQLYGHSSRNCHA--RP--RCVKCLGDHATAL 179
T +Q H +GH SRNC P +C KCL T L
Sbjct: 123 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 161
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 75 TPSQCHNCQLYGHSSRNCHA--RP--RCVKCLGDHATAL 179
T +Q H +GH SRNC P +C KCL T L
Sbjct: 123 TVTQMHQSPGFGHVSRNCRLPFSPGHQCRKCLNSGITYL 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,660
Number of Sequences: 28952
Number of extensions: 198334
Number of successful extensions: 658
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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