Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0501
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.4  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.2  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 LCINLVHHFIELVKGIVP 503
           LC N  H +I  +KG +P
Sbjct: 11  LCDNFCHRYISCLKGKMP 28


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 LCINLVHHFIELVKGIVP 503
           LC N  H +I  +KG +P
Sbjct: 167 LCDNFCHRYISCLKGKMP 184



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 244 LDALCIQQVEVLRMQNRDASLAYFGCDFF 330
           +D+L +Q ++VLR    +    +  CD F
Sbjct: 143 VDSLMVQAIQVLRFHLLELEKVHELCDNF 171


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 145 QHYSLKSSMNNIQCSLSSYVSVTNI 71
           Q  S+K S NN QC   S    TN+
Sbjct: 296 QDLSMKLSKNNDQCLDLSKTKETNL 320


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 145 QHYSLKSSMNNIQCSLSSYVSVTNI 71
           Q  S+K S NN QC   S    TN+
Sbjct: 188 QDLSMKLSKNNDQCLDLSKTKETNL 212


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 550 RIGNSITSSNHSSYLNG 500
           +I N  TS  HS++LNG
Sbjct: 190 KISNLNTSLIHSTHLNG 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,855
Number of Sequences: 336
Number of extensions: 2152
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)