Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0501
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   5.6  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    25   5.6  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   5.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   5.6  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.8  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   9.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 352 RVFSRL*RKSRIQNKPGKHLYFAYVIPQPVECIKH 248
           RV  RL RK R   K  KHLY    +       KH
Sbjct: 100 RVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 352 RVFSRL*RKSRIQNKPGKHLYFAYVIPQPVECIKH 248
           RV  RL RK R   K  KHLY    +       KH
Sbjct: 100 RVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 378 ENKPELFSHECFPDCKEKV 322
           +NKPE + H   PDCK  +
Sbjct: 121 DNKPEEYYHLSAPDCKSYI 139


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 484 NSIKWCTKLIHSIE*ARKCLLD*NELMHSER 392
           N IK C   +  +   ++CL D N  MH ++
Sbjct: 92  NRIKECLLFVRQVRDFKECLQDLNRAMHHQQ 122


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 389 DIRWKISLNYFRTSVFQTVKKKSHPK*AREASLFCIR 279
           D +W         S+FQT ++      +   S+FC+R
Sbjct: 148 DSKWHKMATRLIVSIFQTAQRSGENAQSTTPSIFCVR 184


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 322  RIQNKPGKHLYFAYVIPQPVECIKH 248
            R QN P K +   +VI  P   +KH
Sbjct: 1336 RFQNAPLKQMALNFVIANPFTSVKH 1360


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 387 Y*MENKPELFSHECF 343
           Y M + PE F HECF
Sbjct: 10  YSMTSDPESFGHECF 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,775
Number of Sequences: 5004
Number of extensions: 34872
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)