Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0501
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   7.7  
SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   7.7  

>SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 334 TVWKTLVRK*FRLIFHLISPVRYALTHSNLVGIF 435
           T W+++++   + + H + P +Y LT +N VG++
Sbjct: 519 TEWQSILQSLGKPVVHTLVPNKYRLTDTNKVGLY 552


>SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 547 IGNSITSSNHSSYLNGTMPLTNSIKWCTKLIHSIE*ARKCLLD 419
           +G+   + N +  L     L+N  K C+K + SIE A++  LD
Sbjct: 41  VGSIANARNKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


>SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 547 IGNSITSSNHSSYLNGTMPLTNSIKWCTKLIHSIE*ARKCLLD 419
           +G+   + N +  L     L+N  K C+K + SIE A++  LD
Sbjct: 41  VGSIANARNKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,983,223
Number of Sequences: 59808
Number of extensions: 246584
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)