Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0501
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26100.1 68418.m03105 hypothetical protein                          27   8.3  
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    27   8.3  
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa...    27   8.3  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   8.3  

>At5g26100.1 68418.m03105 hypothetical protein 
          Length = 175

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 294 RCFPG-LFWMRLFLYSLENTRAKIIQ-AYFPSNI 389
           R  PG +F+ + F YS+ N  AK++Q  +F SN+
Sbjct: 84  RSLPGDIFYAKFFFYSI-NPNAKVVQHCHFRSNL 116


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 169 RGSAMSFEQHYSLKSSMNNIQCSLSSYVS 83
           + S +S +  ++  S +NN++ S SSYVS
Sbjct: 466 QSSQLSLKSFFTTNSKVNNVEDSSSSYVS 494


>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
           family protein
          Length = 408

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 169 RGSAMSFEQHYSLKSSMNNIQCSLSSYVS 83
           + S +S +  ++  S +NN++ S SSYVS
Sbjct: 265 QSSQLSLKSFFTTNSKVNNVEDSSSSYVS 293


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 20   FDKFLPYCIFSCLSFFFNVSN 82
            F   LP+   SCL F F++SN
Sbjct: 950  FHSCLPFIFHSCLPFIFDISN 970


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,718,630
Number of Sequences: 28952
Number of extensions: 169879
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)