Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    52   5e-08
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.0  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   1.8  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.1  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   9.4  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 51.6 bits (118), Expect = 5e-08
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 11/75 (14%)
 Frame = +3

Query: 3   VSADKNEILFQEFNMNYNNEPEIFKRGTILLRKSI---LHN-------KVNKSIIVDV-H 149
           VSA+K+EILF +F +NYN EPEI+K+G+I +R+ I    H        K  K +++ + H
Sbjct: 182 VSAEKHEILFSKFGINYNFEPEIYKKGSIWIREPIDQEWHQQDKKFSVKQKKKMVLSILH 241

Query: 150 DDMLKDKFWKENIYI 194
             ++ D FW    ++
Sbjct: 242 VSLIDDDFWTSRPFL 256


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 57  NEPEIFKRGTILLRKSI--LHNKVNKSIIVDVHDDMLKDKFWK-ENIYILSVKKSK 215
           N PE  +     L+KSI  L NKVNKS I D+  ++ ++   +   +Y  S+ K++
Sbjct: 111 NTPEYQRMQWEALKKSINGLINKVNKSNIRDIIPELFQENIIRGRALYCRSIMKAQ 166


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 48  NYNNEPEIFKRGTILLRKSILHNKVNKSIIVDVHDDML 161
           ++N    I+++  ILLRK ILH+     + VD+  + L
Sbjct: 58  SHNGAIYIYQKNGILLRKMILHSASVVDLSVDLESENL 95


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 226 IKFCLDFFTDNIYMFSFQNLSFNISS*TSTMIDL 125
           +  C+   T  I   S +NL+FNI    ST ++L
Sbjct: 68  LSICVPIVTTCIPYHSVENLNFNIRQNISTTLNL 101


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 60  EPEIFKRGTILLRKSILHNKVNKSIIVDVHDDMLKDKFW 176
           E +   +  + LRK +  +   +SII+D H   L ++ W
Sbjct: 487 ESDESSKNDMQLRKQLEQDNGKESIIIDPHSASLLEQKW 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,509
Number of Sequences: 5004
Number of extensions: 28955
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)