Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    51   5e-07
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970...    28   4.0  
03_04_0039 - 16726375-16726719                                         27   7.0  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   9.2  

>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 29/35 (82%)
 Frame = +3

Query: 3   VSADKNEILFQEFNMNYNNEPEIFKRGTILLRKSI 107
           +S DKNE+LFQ+F++NYNNEP +F++G+   R+ +
Sbjct: 411 LSKDKNELLFQQFHLNYNNEPAVFRKGSCTYRQKV 445



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
 Frame = +3

Query: 6   SADKNEILFQEFNMNYNNEPEIFKRGTILLRKSI--------LHNKVNKS--IIVDVHDD 155
           S DKNE+L Q+F +NY++EP IF++G+ + R  +          N + ++  +I + + D
Sbjct: 203 SKDKNELLSQQFQINYDDEPAIFRKGSCVYRDKVETMVKTDRCGNPIKRTRLVITNANVD 262

Query: 156 MLKDKFWKENIYIL 197
           ++  +FW+ + YIL
Sbjct: 263 IIGPEFWENHPYIL 276


>01_06_1221 -
           35495427-35496542,35496650-35496839,35496988-35497061,
           35497407-35497573,35497685-35498018
          Length = 626

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 133 IDLFTLLCNIDFRNRIVPLLNISGSLL*FML 41
           + L +++ N+ F + I+P LNIS  LL F L
Sbjct: 42  VALSSVMMNLVFTSGIIPSLNISAGLLGFFL 72


>03_04_0039 - 16726375-16726719
          Length = 114

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  DKNEILFQEFNMNYNNE-PEIFKRGTILLRKSILHNKVNKSIIVDVHDDM 158
           D+N +L  E N N+ ++ P    R   L+R+  L+N + +  +VD++ D+
Sbjct: 32  DQNRVLINEINQNHESKVPGDLSRNVGLIRE--LNNNIRR--VVDLYADL 77


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 18  NEILFQEFNMNYNNEPEIFKRG 83
           N+  ++     YNN+P +F RG
Sbjct: 156 NKTTYENLKYKYNNQPNVFDRG 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,924
Number of Sequences: 37544
Number of extensions: 133151
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)