Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9602| Best HMM Match : RVT_1 (HMM E-Value=1.6)                      28   4.1  
SB_48552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_16502| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=5)             27   7.2  
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_9602| Best HMM Match : RVT_1 (HMM E-Value=1.6)
          Length = 453

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 147 HDDMLKD--KFWKENIYILSVKKSKQNL 224
           HD  L+   K WK+N   LS+KKS+ NL
Sbjct: 200 HDRALRHVLKLWKDNNLTLSLKKSRFNL 227


>SB_48552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = +3

Query: 27  LFQEFNMNYNNEPEIFKRGTI-LLRKSILHNKVNKSIIV-----DVHDDMLKD--KFWKE 182
           LF+  +   N+  EIF    + ++ +      +   I+V     + HD  L+   K W++
Sbjct: 262 LFKRLHFGVNSAAEIFNEEVLKVVAQEPNAISIYDDILVYGTSQEEHDRALRHVLKLWRD 321

Query: 183 NIYILSVKKSKQNL 224
           N   LS+KKS+ NL
Sbjct: 322 NNLTLSLKKSRFNL 335


>SB_16502| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=5)
          Length = 415

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 60  EPEIFKRGTILLRKSILHNKV-----NKSIIVDVHDDMLKDKFWKENIYILSVKKSKQN 221
           +PE++  G + L   + H  V     N  +IVDV DD+ + K + + I +  +  S++N
Sbjct: 300 DPEVYGNG-LALNLGVCHEGVKGVHQNSHVIVDVIDDVTRCKKYADVIKLKHIYISRRN 357


>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 208 FFTDNIYMFSFQNLSFNISS*TSTMIDLFTLLCN 107
           F T  I M S    + ++ S   T +D FTLLCN
Sbjct: 72  FPTITINMLSCMTQNISLLSENETRLDNFTLLCN 105


>SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 308 CHCYVKLLNDFHIYLTDLYDFCC 240
           CH Y     D+  Y  D  D+CC
Sbjct: 256 CHDYTDYCRDYTDYCHDYTDYCC 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,699
Number of Sequences: 59808
Number of extensions: 181363
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)