Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
           protein F21H7.3 protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +3

Query: 105 ILHNKVNKSIIVDVHDDMLKDKFWKENIYILSVKKSKQNLMYI 233
           IL NKV K ++ DV  D  K K W EN + +S+K + + +M I
Sbjct: 59  ILFNKVKK-LMEDVPQDGRK-KNWFENFWWISIKYALEGVMLI 99


>U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical
           protein K05G3.1 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 305 HCYVKLLNDFHIYLTDLYDFCCR 237
           H Y++L ND  +    LYD C R
Sbjct: 78  HSYIRLKNDTKVAAIQLYDSCTR 100


>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  LRKSILHNKVNKSIIVDVHDDMLKDKFWKE 182
           +R  +LH    K++I D   D + +KFWK+
Sbjct: 493 IRTHLLHLVDTKTLICDDDCDPVDEKFWKQ 522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,653
Number of Sequences: 27780
Number of extensions: 152815
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)