Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 183 NIYILSVKKSKQNLMYIGPTTEI 251
           N+ I SVK S+ ++ +  P TEI
Sbjct: 424 NVRITSVKSSELSISWDAPITEI 446


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 170 ILERKHIYIICKKI*TKFNVYRSYNRNH 253
           I E+ +  ++C+K   + N+Y+S+ R+H
Sbjct: 57  IEEKTYQCLLCQKAFDQKNLYQSHLRSH 84


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 102 SILHNKVNKSIIVDVHDDMLKDKFWKENIYILSVKKSKQNLMYIGP 239
           ++LH+ +NK II   +D + KD +   +I +L  +K  +    +GP
Sbjct: 231 TVLHS-INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGP 275


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 230 YRSYNRNHKDQLSKYESHLE 289
           Y +YN N+  QL    +H+E
Sbjct: 91  YSNYNNNNYKQLCYNINHIE 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,316
Number of Sequences: 438
Number of extensions: 2028
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)