Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0500
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31580.1 68415.m03858 expressed protein   contains Pfam profi...    46   2e-05
At2g32320.1 68415.m03951 expressed protein  contains Pfam profil...    36   0.010
At2g32330.1 68415.m03952 expressed protein   contains Pfam profi...    35   0.029
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    29   1.5  

>At2g31580.1 68415.m03858 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 567

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
 Frame = +3

Query: 12  DKNEILFQEFNMNYNNEPEIFKRGTILLRKSILHN------KVNKSIIVDVHDDMLKDKF 173
           +KNE+L ++F + YN+ P IF+ G+ + R     N      K+   ++VD H ++++  F
Sbjct: 498 EKNELLSRQFGIEYNSLPVIFRMGSSVFRLKEAENGVVSGKKLEGEVVVD-HCNIIERCF 556

Query: 174 WKENIYILS 200
           W+E+++ILS
Sbjct: 557 WEEHLHILS 565



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +3

Query: 15  KNEILFQEFNMNYNNEPEIFKRGTILLRKSI 107
           KNE+LFQ+F +NY   PE+F++G+ L +K +
Sbjct: 233 KNELLFQKFGINYKTLPELFRQGSCLFKKKV 263


>At2g32320.1 68415.m03951 expressed protein  contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 243

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +3

Query: 15  KNEILFQEFNMNYNNEPEIFKRGTILLRKSILHNKVN 125
           +NE+LFQ+F +NY   P +F++G+ L +  ++ + ++
Sbjct: 186 RNELLFQQFGINYKMLPVLFRQGSCLFKTKVIFSIIS 222


>At2g32330.1 68415.m03952 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 320

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
 Frame = +3

Query: 12  DKNEILFQEFNMNYNNEPEIFKRGTILLR-----------KSILHNKVNKSIIVDVHDDM 158
           +KNE+L Q+F + YN+ P IF+ G+ + R             +   +V   + VD + ++
Sbjct: 246 EKNELLSQQFGIEYNSLPVIFRMGSSVFRLKTQEGVTEENGEVSGKQVEAEVGVD-YSNI 304

Query: 159 LKDKFWKENIYILS 200
           +   FW+++ +ILS
Sbjct: 305 IDQCFWQQHPHILS 318


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
 Frame = +3

Query: 33  QEFNMNYNNE----PEIFKRGTILLRKSILHN----KVNKSII-------VDVHDDMLKD 167
           +E N+  NN     P+IF + T L+   + HN    K  KS+I       V+V  + +KD
Sbjct: 495 KELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKD 554

Query: 168 KF--WKENIYILSVKKSKQNLMYIGP 239
            F  W E++  L V   + N  Y GP
Sbjct: 555 IFPSWLESLPSLHVLNLRSNKFY-GP 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,606,472
Number of Sequences: 28952
Number of extensions: 127950
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)