Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0499
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   3.8  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   6.6  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   8.7  

>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 352 GYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGF 483
           G   NI+  N   P  ++  + +L TA     CFP   KN G F
Sbjct: 85  GMAGNIFARNRIAP--ARWLITSLSTAATFMFCFPKTSKNIGAF 126


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 373 NPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFC 486
           NP  C+    K    +LC   +   C+  H KNAG  C
Sbjct: 338 NP-CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLC 374


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 365 TSTTLTFASRTAAKDASTHC-AQRLKSARASLTTSRTPAASAS 490
           TS++L  +S T++  AS+   +  L S+  + TTS TP +SA+
Sbjct: 135 TSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 533 RPEAVAILNPIGHVAMQKPPAFLTWSGKHVQISGAVHNALTHPLLQ 396
           +P   A L        ++PP   TW  +H + + A +N +T  L+Q
Sbjct: 252 QPSLEAQLPAAARKRKKEPPKDATWLFQHAKATAAYNNDITKYLVQ 297


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 588 AHSIYVRSLV*SHPCNXLSTGSS 520
           AHS Y+ SL  SHP   L+T S+
Sbjct: 330 AHSEYITSLDFSHPFGTLATAST 352


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 239  IGVCHTKYLQLNLSXIRSRYLKXXDPGPISAS-FVLAAMAT*GTSTTLTFASRTAAKDAS 415
            +G C T  + ++L+   S + +  D  P+S S  VL A+++   +  L F S     + S
Sbjct: 1016 LGGCRTMDVLISLNETVSGFFRLSDRDPLSKSNRVLLALSSTLLNLILVFTSADFMSETS 1075

Query: 416  THCAQRLKS 442
                  LKS
Sbjct: 1076 KTLNMALKS 1084


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 602 VTASWHTVFTSVV*FKAIPATXSRPEAVAILNPI 501
           V AS   + T V  +K +P T  +PE+  +LN I
Sbjct: 64  VGASQKALNTFVEHYKYVPGTYDKPESFEMLNSI 97


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 113 PPTSRTDRRWIPARAR--AHIL*STLFPS 33
           PP SRT R+ +P RA   +H L ST  P+
Sbjct: 191 PPNSRTARKPVPRRANSASHNLGSTKSPN 219


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +2

Query: 203 LSQXHTVNTMSDIGVCHTKYLQLNLSXIRSRYLKXXDPGPISASFVLAAMAT*GTSTTLT 382
           + Q H++      G   +  L+  +  ++S+Y K  D   ++AS  LAA    G  T  +
Sbjct: 322 VEQQHSIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTGLAA-CNIGGVTLHS 380

Query: 383 FASRTAAKDASTHCAQRLK 439
           FA    A+++      ++K
Sbjct: 381 FAGVGLARESVDLLVSKIK 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,105
Number of Sequences: 5004
Number of extensions: 44598
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)