Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0499
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0301 - 14785898-14786299,14786785-14787234 32 0.42
04_03_0893 - 20602008-20602361,20602455-20602604,20602723-206028... 31 0.55
07_03_1089 - 23879483-23881909 31 0.73
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 30 1.3
07_01_0483 + 3633010-3633203,3633652-3633957,3634598-3634821,363... 29 2.2
04_03_0281 - 13872289-13872891 29 2.2
08_02_1202 - 25253175-25253340,25255573-25255681,25256021-252561... 29 3.9
03_05_0849 + 28204180-28204539 28 5.1
02_01_0134 - 965931-966001,966127-966388 28 6.8
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783... 27 8.9
06_01_0808 + 6097751-6097913,6098298-6098731 27 8.9
>01_03_0301 - 14785898-14786299,14786785-14787234
Length = 283
Score = 31.9 bits (69), Expect = 0.42
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = -3
Query: 546 CNXLSTGSSGHFESNRACSDAEAAGVLDVVREARADFRRCAQCVDASFAAVRLANVRVVD 367
C + T S G S RA + A VLD V A ++FR A C+ S A+R A VR
Sbjct: 71 CVNVGTLSEGWLPSMRAAASAGRPWVLDPVAAAASEFRMEA-CL--SLLALRPAVVRGNA 127
Query: 366 VPHVAIAARTNDAEIGPGSXSFR 298
+A+A+R+ A + +F+
Sbjct: 128 SEILALASRSLAASSSSSTTTFK 150
>04_03_0893 -
20602008-20602361,20602455-20602604,20602723-20602835,
20603105-20603377,20603746-20603886,20604638-20604974
Length = 455
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 377 LTFASRTAAKDASTHCAQRLKSARASLTTSRTPAASA 487
L+F RTA + S+H AQ L+ A+L T P+ ++
Sbjct: 346 LSFKVRTACSEMSSHSAQALRELSAALRTMTVPSTTS 382
>07_03_1089 - 23879483-23881909
Length = 808
Score = 31.1 bits (67), Expect = 0.73
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 251 HTKYLQLNLSXIRSRYLKXXDPGPISASFVLAAMAT*G---TSTTLTFASRTAAKDASTH 421
H L +L+ + + DPGP++A+ ++AA A G + A A +D H
Sbjct: 71 HLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLH 130
Query: 422 CAQRLKSARASLTTSRTPAASASLHARLDS 511
A ARASL PA S HA L S
Sbjct: 131 NAMMSAFARASLA---APAVSV-FHALLGS 156
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 149 NTNENIAKFYGNNTSHGFLSQXHTVNTM 232
N+N NI++F GN T H ++ H V+ M
Sbjct: 319 NSNSNISQFGGNGTDHSSGNRYHVVDEM 346
>07_01_0483 +
3633010-3633203,3633652-3633957,3634598-3634821,
3635722-3635825,3636528-3636662,3637537-3637705,
3638074-3638209,3639200-3639338,3640487-3640663,
3640874-3641041,3641363-3641458,3642217-3642345,
3642439-3642669
Length = 735
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 518 AILNPIGHVAMQKPPAFLTWSGKHVQIS 435
A +NPIG V+ Q AFL W+ H+ S
Sbjct: 534 ADINPIGSVSKQDLRAFLRWAAVHLHYS 561
>04_03_0281 - 13872289-13872891
Length = 200
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 350 MAT*GTSTTLTFASRTAAKDASTHCAQRLKSARASLTTSRTPAASASL 493
MAT T+TT T S + A + RAS +T R PA S SL
Sbjct: 1 MATTPTTTTTTTPSAARLLAPAAAAAAAAAATRASFSTLRPPAISLSL 48
>08_02_1202 -
25253175-25253340,25255573-25255681,25256021-25256123,
25256246-25256277,25257697-25258178,25258946-25259025,
25259107-25259165,25259341-25259413,25259526-25259660
Length = 412
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 343 CCNGYVRNIYNPNICEPHCSKGC 411
C NGY I P C P+ S C
Sbjct: 147 CMNGYATGIMAPGRCSPYASASC 169
>03_05_0849 + 28204180-28204539
Length = 119
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 311 DPGPISASFVLAAMAT*GTSTTLTFASRTAA 403
DP P S++ ++ M T TT+T ASR A
Sbjct: 60 DPPPPSSAMMMTIMTTRARMTTMTMASRARA 90
>02_01_0134 - 965931-966001,966127-966388
Length = 110
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 385 CEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGFKMATASGREXVA 546
C P C K +C I C P+ + A G C C + +G+ VA
Sbjct: 40 CYPDCRKSLPRFICVLKCIDDCSPNKKRMAVGDCNKFCLLAICGMALNGQADVA 93
>12_02_0946 +
24675334-24676338,24676537-24676757,24678253-24678307,
24678446-24678571
Length = 468
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 395 TAAKDASTHCAQRLKSARASLTTSRTPAASASLHARLDSKWP 520
TA++ A T +R+ RASL + PA S RLD WP
Sbjct: 47 TASESAHTCSGRRI---RASLRVADPPAVSRLHLHRLDGPWP 85
>06_01_0808 + 6097751-6097913,6098298-6098731
Length = 198
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 105 SRGSKVATEVAASKITPMRTSPNFTGTTPA 194
S G K+ +VAA+ P +P+ T TTP+
Sbjct: 111 SNGMKLVVDVAAASPAPAPKAPSTTPTTPS 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,802
Number of Sequences: 37544
Number of extensions: 332676
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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