Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0499
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 45 6e-05
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43565| Best HMM Match : EGF (HMM E-Value=2.8e-05) 28 5.2
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 28 5.2
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 5.2
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6) 28 5.2
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 5.2
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 343 CCNGYVRNIYNPNICE-PHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIG 507
CC+G+ ++ N C P CSKGC +C P+ CTC P + G C C +G
Sbjct: 84 CCSGWAQS---GNSCPTPICSKGCAQGVCVKPDNCTCHPGY---DGPSCDQACTLG 133
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 42.3 bits (95), Expect = 3e-04
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 385 CEPHCSKGCVNALCTAPEICTC 450
C P C++GCVN CT+P++CTC
Sbjct: 232 CVPVCTQGCVNGKCTSPDVCTC 253
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 534 RVRCRDGFKLDYGRKYC 584
R RCRDG+KLD R+ C
Sbjct: 2169 RCRCRDGYKLDPNRRTC 2185
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Frame = +1
Query: 436 EICTCFPDHVKNAG-------GFCIATCPIGFKMATASGR 534
EI C P+ KNAG G TCPIGFK T R
Sbjct: 134 EINLCVPNPCKNAGTCTEKGGGRYDCTCPIGFKGVTCEER 173
>SB_43565| Best HMM Match : EGF (HMM E-Value=2.8e-05)
Length = 192
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 382 ICEPHCSKGCVNALCTAPEICTCFPDHVKN 471
IC+P C G C AP C C P N
Sbjct: 151 ICDPPCLNG---GRCKAPNTCACLPGWTGN 177
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 534 RVRCRDGFKLDYGRKYC 584
R RCRDG+KL+ R+ C
Sbjct: 458 RCRCRDGYKLEPNRRTC 474
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 409 CVNALCTAPEICTCFPDHVKNAGGFCIATCPIGFKMATAS 528
C+ C P C PDHV A C CP+ + + S
Sbjct: 1587 CLAKRC--PPYAQCVPDHVLKARCTCPERCPLTYNLICGS 1624
>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
Length = 287
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 395 TAAKDASTHCAQRLKSARASLTTSRTPAASASLHARLDSK 514
T K A+ + A L + S+ +S TP + L AR DSK
Sbjct: 29 TKRKFANNYTAFSLPESHQSIRSSHTPQNATPLQARADSK 68
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 176 YGNNTSHGFLSQXHTVNTMSD 238
YGN +SHGF + + VN SD
Sbjct: 2163 YGNRSSHGFQMKTNVVNDYSD 2183
>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Frame = +2
Query: 152 TNENIAKFYGNNTSHGFLSQXHT-VNTMSDIGVCHTKYLQLNLSXIRSRYLKXXDPGPIS 328
T+ + Y +H + + H ++T S H +Y + +R P P
Sbjct: 3 THAEYTRAYTRRYTHAYTRRVHPRLHTPSTPTATHAEYTHAYTRRVHTRLHTPSTPTPTH 62
Query: 329 ASFVLAAMAT*GTSTTLTFASRTAAKDASTHCAQRLKSARASLTTSRTPAASASLHARLD 508
A A T ++ TA TH +R R T+ TP + +H R+
Sbjct: 63 AENTHAYTRLVHPRLH-TPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPTRARRVHQRIQ 121
Query: 509 S 511
+
Sbjct: 122 T 122
>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Frame = +2
Query: 152 TNENIAKFYGNNTSHGFLSQXHT-VNTMSDIGVCHTKYLQLNLSXIRSRYLKXXDPGPIS 328
T+ + Y +H + + H ++T S H +Y + +R P P
Sbjct: 3 THAEYTRAYTRRYTHAYTRRVHPRLHTPSTPTATHAEYTHAYTRRVHTRLHTPSTPTPTH 62
Query: 329 ASFVLAAMAT*GTSTTLTFASRTAAKDASTHCAQRLKSARASLTTSRTPAASASLHARLD 508
A A T ++ TA TH +R R T+ TP + +H R+
Sbjct: 63 AENTHAYTRLVHPRLH-TPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPTRARRVHQRIQ 121
Query: 509 S 511
+
Sbjct: 122 T 122
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +1
Query: 352 GYVRNIYNPNICEPHCSKGCVNALCTAPE--ICTCFPD 459
G+VR IYNP C G L +CTC P+
Sbjct: 407 GHVRCIYNPCRISDICKNGGTCTLLQEKHHFVCTCLPE 444
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 84 PPAVSTRSRGSKVATEVAASKITPMRTSPNFTGTTP 191
PP ++T S VAT + + +P TSP T T+P
Sbjct: 639 PPTITTHSL--PVATSLPKQQTSPKVTSPQQTSTSP 672
>SB_23150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1133
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 179 RKIWRCSHWCYLGSRDLRSHL*PPTSRTDRRW 84
RK +C++ CY SHL PP ++ D RW
Sbjct: 295 RKNHKCNNLCYGCGEQECSHLVPP-AKQDHRW 325
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 298 PKGXGSRPDLSVIRSCCNGYVRNIYNPNICEPHCSKGCVNALC 426
P S+ D S CC+ + + + CE HC+ CV A C
Sbjct: 1221 PAKCASQCDKSCPSECCSRAKGALCSED-CEIHCTPACVRAEC 1262
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 304 GXGSRPDL--SVIRSCCNGYVRNIYNPNICEPHCSKGC 411
G S+P++ S R C NG P C P C+KGC
Sbjct: 1298 GKSSKPEIMASTKRECPNGC------PTSCYPSCNKGC 1329
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,657
Number of Sequences: 59808
Number of extensions: 387606
Number of successful extensions: 948
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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