Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0499
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.048
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   0.083
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.34 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 344 AAMAT*GTSTTLTFASRTAAKDASTHCAQRLKSARASLTTSRTPAASASLHAR 502
           A + T G +TTL  AS T    A+        +A A++TT  T   +  L  R
Sbjct: 217 ATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKR 269



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  GSCWYPPAVSTRSRGSKVATEVAASKITPM 158
           GS  YP + +T + G+K  TE  A   TP+
Sbjct: 322 GSREYPTSNATDTDGTKERTEEVALDRTPV 351


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 PISASFVLAAMAT*GTSTTLTFASRTAAKDASTHCAQRLKSARASLTTSRTP 475
           P S+   L+A AT  TST+   AS TAA    + C   +   +  +  S+ P
Sbjct: 823 PASSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQP 874


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 209 QXHTVNTMSDIGVCHTKYLQLNLSXIRSRYLKXXDPGPISASFVLAAMAT 358
           Q HT N +    + H +YL  +L  +  R+L    P   +     A++AT
Sbjct: 792 QSHTPNGIVKTWIAHDRYLPNSLRILLKRFLDITTPPTPNLLRYFASIAT 841


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 316 RPDLSVIRSCCNGYVRNIYNPNI-CEP 393
           R  + ++ +CC G VR  Y P   C+P
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKP 425


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 84  PPAVSTRSRGSKVATEVAASKITPMRTSPNFTGTTP 191
           P   S  S  S  A   AA        SP+ TG++P
Sbjct: 34  PATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSP 69


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 581 VFTSVV*FKAIPATXSRPEAVAILNPIGHVAMQKPPAFLTWS 456
           VF S    + I +    PE   I   +GH+ +   P+F  +S
Sbjct: 315 VFQSTQYIRHIKSPYHTPEPDCIHELLGHMPLLADPSFAQFS 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,928
Number of Sequences: 438
Number of extensions: 3466
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)