Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0499
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    29   3.2  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    28   4.3  
At1g29350.1 68414.m03588 expressed protein                             28   4.3  
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f...    28   5.7  
At1g68310.1 68414.m07803 expressed protein contains Pfam profile...    27   7.5  
At3g62390.1 68416.m07008 expressed protein several hypothetical ...    27   9.9  

>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 340 SCCNGYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHV 465
           +CC GY+        C   C +      C A E+C CF + V
Sbjct: 63  TCCGGYMP-------CSGKCGESKCPQFCLATEVCLCFGNSV 97


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 91  AGGYQQEPEHIYYNQHCSRAVYQGQGDLSL 2
           AGGY+Q  +  +Y  H     YQ Q ++SL
Sbjct: 771 AGGYRQAQQQQHYGSHGYPNYYQSQTEMSL 800


>At1g29350.1 68414.m03588 expressed protein
          Length = 831

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 91  AGGYQQEPEHIYYNQHCSRAVYQGQGDLSL 2
           AGGY+Q  +  +Y  H     YQ Q ++SL
Sbjct: 771 AGGYRQAQQQQHYGSHGYPNYYQSQTEMSL 800


>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
           factor family protein similar to to PRESSED FLOWER
           (GP:17907768) {Arabidopsis thaliana};
          Length = 268

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 146 DNTNENIAKFYGNNTSHGFLSQXHTVNTMS 235
           +N  EN+ K YG+ + H    Q H+ N  S
Sbjct: 159 NNGMENLFKMYGHESDHNHQQQHHSSNAAS 188


>At1g68310.1 68414.m07803 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 159

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 349 NGYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVK 468
           N YVR  + P +   HCS   V  LC   ++    P   K
Sbjct: 75  NSYVRVTFTPTV--EHCSMATVIGLCVRVKLLRSLPSRYK 112


>At3g62390.1 68416.m07008 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 475

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 182 SRKIWRCSHWCYLGSRDLRSH 120
           SR +  CSHWC  G  D  +H
Sbjct: 445 SRAVQDCSHWCLPGVPDTWNH 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,281
Number of Sequences: 28952
Number of extensions: 245390
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)