Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0498
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DA2AD6 Cluster: PREDICTED: hypothetical protein;...    33   4.0  
UniRef50_Q06VE0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  

>UniRef50_UPI0000DA2AD6 Cluster: PREDICTED: hypothetical protein;
           n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 1656

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 434 FRGARGECQSVAWLLGILLLWSVSRSGPCVVHTRL 538
           F+  +G   S  W LG+L +W   R GPC   T L
Sbjct: 656 FKWPKGTTVSPRWALGMLTMWXALRLGPCQPSTHL 690


>UniRef50_Q06VE0 Cluster: Putative uncharacterized protein; n=1;
           Trichoplusia ni ascovirus 2c|Rep: Putative
           uncharacterized protein - Trichoplusia ni ascovirus 2c
          Length = 648

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 538 KSRMHNARS-APRNAP*QQNSQEPGYRLTL--SPRPSE*LRSRNNQNKCELSFETLCTSL 368
           + R+   RS +PR    Q  S  P  R+T   SP PS   RSR+  N  E  F T CT  
Sbjct: 122 RRRVTQTRSPSPRRRATQSRSPSPRRRVTQTRSPSPSRRRRSRSRSNSVE--FSTNCTKF 179

Query: 367 IH 362
           I+
Sbjct: 180 IN 181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,410,573
Number of Sequences: 1657284
Number of extensions: 11115601
Number of successful extensions: 26859
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26853
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)