Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0498
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   3.7  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   4.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.6  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   8.6  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 492 SNKIPKSQATD*HSPRAPRNSCVHAITKTNVN 397
           S KIPK Q T  +  RAP++     + +++VN
Sbjct: 491 STKIPKKQHTSAYESRAPQSKVPENLKESHVN 522


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 172 KLSEVIKGDEVFFFAKLNLFKLHRKVSTGTQQK 74
           KLSE+  GD V  F++ N+F L  K+     +K
Sbjct: 330 KLSELKDGDCVVAFSRKNIFTLKSKIDQALGKK 362


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 PLKTSTSIFKDSITHSVMSMS 324
           PLKTS S FK+   HS +++S
Sbjct: 311 PLKTSNSFFKELSPHSQITLS 331


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 247 VGQHHPLKTSTSIFKDSITH 306
           V  HHP+ +ST +  +S+TH
Sbjct: 438 VVDHHPIISSTQLSNESLTH 457


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 230 VIPHTKRKAQALIALFNSEQTLGS 159
           + P TK K Q  + + N+E T+GS
Sbjct: 38  ITPATKEKNQNKLEILNNETTIGS 61


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 222 WYYQPAYFSGTTSSTKDFDFNLQGFHHTLCDVYELC-*PHN*CAIGIGCIREVQSVSKES 398
           W Y  AY+    + T+ F+ N +     + ++ ELC  P   C++ +   R +       
Sbjct: 420 WTYAFAYYLARNNQTEIFEDNQRDLELAVENLSELCERPCQDCSLSVFKQRVLDKTVYVR 479

Query: 399 SHLFWLLRE--RNYSEGRGESV 458
           S    LL +  R  +EGR E V
Sbjct: 480 SRRDVLLDDTARGLAEGRWEYV 501


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -1

Query: 238 AGW*YHIPKEKHKH*LHFLTLNKLSEVIKGDEVFFFAKLNLFKLHRKVSTGTQQKLKA 65
           A W Y I K   ++ + F     L+++I GD++  F   + +    +++   Q K  A
Sbjct: 186 AKWAYKICKRYPEYTVEFTGCGLLNDLIDGDDLLHFRPSSTYGFCTQIAVFHQSKNNA 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,211
Number of Sequences: 5004
Number of extensions: 49661
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)