Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0498
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0871 - 25562767-25563509,25563889-25565776                       29   2.9  
04_04_1609 + 34760576-34760688,34760781-34760948,34761566-347616...    29   2.9  
07_01_1039 - 9037689-9038225,9038831-9040627                           29   3.8  

>06_03_0871 - 25562767-25563509,25563889-25565776
          Length = 876

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 495 GAFLGADRALCIRDFYKNGNSANVA-RRKF 581
           G + GAD  L I D+  NG+ AN+A  R+F
Sbjct: 603 GFYWGADEKLLIHDYATNGSLANIAFSRRF 632


>04_04_1609 +
           34760576-34760688,34760781-34760948,34761566-34761634,
           34762125-34762247,34762296-34762501,34762723-34762729,
           34762961-34763006,34763092-34763151,34763249-34763317,
           34763790-34763873,34764178-34764263,34764859-34764949,
           34765029-34765109,34765191-34765265,34765392-34765526
          Length = 470

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 340 TNAQLV*GVSEKYRVSQKKVHICFGYCVNAT 432
           T A+L     E++ V   K ++C  YC+NAT
Sbjct: 135 TLAELESFALEQWEVRMTKAYVCISYCLNAT 165


>07_01_1039 - 9037689-9038225,9038831-9040627
          Length = 777

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 175 SELKSAI-NACAFLLVCGITSLPISVGQHHP 264
           SE+K A+ + CAF+++CG T L  +    HP
Sbjct: 72  SEVKCAVLHFCAFIVLCGATHLLAAFTHAHP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,988
Number of Sequences: 37544
Number of extensions: 300558
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)