Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0498
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                29   3.0  
SB_54299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)            28   6.9  
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           27   9.1  

>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 21  VVTVCEVFPLC*LLNAFSFCCVPVETLR*SLNKLSFAKKKTSSPLITSESLFRVKKCNQ 197
           +  VCEV PL   L+A  +CC P  +    + +L+F+   T  P     SL     C Q
Sbjct: 535 IAEVCEVTPLI-SLSAMRYCCWPQMSQSRMVRQLAFSACSTFIPWTDFSSLCSADNCAQ 592


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 528 CTTHGPLRETLHSNKIPKSQATD*HSPRAPRNSCVHAIT 412
           CT H    ET  ++ I   Q T  H    P+ +C H +T
Sbjct: 743 CTHHLTTPETTSTHHISAPQTTSTHHITTPQTTCTHHLT 781


>SB_54299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 214 LVCGITSLPISVGQHHPLKTSTSIFKD-SITHSVMSMSCANHITN 345
           LVCGI  +P+S  + H L    ++F +   +H    ++  N ++N
Sbjct: 63  LVCGILDIPVSGNRIHSLHVLFTLFSEFKNSHHFHQLASQNQLSN 107


>SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -2

Query: 579 IFYALHSPNYRFYKSRVCTTHGPLRETLHSNKIPKSQATD*HSPRAPRNSCVHAIT 412
           +F A       F   +  T H P    LH    P  Q+T+ H P      C H  T
Sbjct: 31  VFTATEDEYLNFSAIKTVTAHRPFDCNLHCLVEPDCQSTNYHPPTRMCELCNHTFT 86


>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
          Length = 706

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 243 NRQAGNTTYQKKSTSIDCTF*L*TNSRKLLREMKFFFLRNSTYLSFTAKS 94
           NR+AGNT  + K  SID       N ++ + E      +N  + S  A++
Sbjct: 19  NRRAGNTDNEGKEESIDAVLQYHQNMQEKIAEEMVLMAQNMKHTSMMAQN 68


>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 415 NQNKCELSFETLCTSLIHPIPIAH 344
           N NKC L +E++CT +I     AH
Sbjct: 125 NNNKCALLYESVCTRIIELSNPAH 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,875
Number of Sequences: 59808
Number of extensions: 381100
Number of successful extensions: 1075
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)