Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0498
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    28   4.2  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    28   4.2  
At1g08310.1 68414.m00917 esterase/lipase/thioesterase family pro...    28   5.6  
At2g43950.3 68415.m05464 expressed protein                             27   7.4  
At2g43950.2 68415.m05465 expressed protein                             27   7.4  
At2g43950.1 68415.m05463 expressed protein                             27   7.4  
At5g01070.1 68418.m00010 zinc finger (C3HC4-type RING finger) fa...    27   9.8  
At4g37060.1 68417.m05248 patatin, putative similar to patatin-li...    27   9.8  
At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9) i...    27   9.8  
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    27   9.8  

>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 495 GAFLGADRALCIRDFYKNGNSANVARRK 578
           G + G+D  L I DF  NG+ AN   RK
Sbjct: 513 GFYWGSDEKLVIYDFVPNGSLANARYRK 540


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 531  VCTTHGPLRETLHSNKIPKSQATD*HSPRAPRNSCVHAITKTNVNFLLRH 382
            V   H P+RE L   K  K+ A   + P  P  SC    + T  +F   H
Sbjct: 1177 VTAAHFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLTMNDFKAAH 1226


>At1g08310.1 68414.m00917 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 315

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 132 KKKTSSPLITSESL-----FRVKKCNQCLCFSFGMWYYQPAYFSGTTSS 263
           K+KT  P++T E L     F   + +  +CF  G W ++PA  S +T S
Sbjct: 202 KRKTGFPMLTKEKLRERNVFDTLRDDFMVCF--GQWDFEPADLSISTKS 248


>At2g43950.3 68415.m05464 expressed protein
          Length = 280

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 577 FLRATFAELPFL*KSRMHNARSAPRNAP*QQNSQEPGYRLTLS 449
           F+++T    P L    +HN ++       + N  EPGY L LS
Sbjct: 119 FIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELS 161


>At2g43950.2 68415.m05465 expressed protein
          Length = 333

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 577 FLRATFAELPFL*KSRMHNARSAPRNAP*QQNSQEPGYRLTLS 449
           F+++T    P L    +HN ++       + N  EPGY L LS
Sbjct: 119 FIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELS 161


>At2g43950.1 68415.m05463 expressed protein
          Length = 343

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 577 FLRATFAELPFL*KSRMHNARSAPRNAP*QQNSQEPGYRLTLS 449
           F+++T    P L    +HN ++       + N  EPGY L LS
Sbjct: 119 FIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELS 161


>At5g01070.1 68418.m00010 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 124

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 228 YQPAYFSGTTSSTKDFDFNLQGFHHTLCDVYEL 326
           Y+P+  SG  SS+ D+D++      + C  +E+
Sbjct: 20  YRPSDVSGEDSSSCDYDYDFHSAVRSFCGEFEI 52


>At4g37060.1 68417.m05248 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 414

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 141 TSSPLITSESLFRVKKCNQCLCFSFGMWYYQPAYFSGTTSSTKDFDFNL 287
           +S   +T  SL  VK  + C+  S    Y+ P YFS   S  K   FNL
Sbjct: 166 SSYQALTDPSL-DVKVSDICIGTSAAPTYFPPYYFSNEDSQGKTRHFNL 213


>At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9)
           identical to SUVH9 [Arabidopsis thaliana] GI:13517759;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH9 (SUVH9) GI:13517758
          Length = 650

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -3

Query: 605 VTNMSNAAEFSTRYIRRITVFIKVAYAQRTVRSEKRSIATKFPRARLPIDTLPAP 441
           V++ + A +FS+ Y   +    + A+AQR  R +  ++      A +P++  P P
Sbjct: 49  VSDFNEATDFSSDY-NTVAESARSAFAQRLQRHDDVAVLDSLTGAIVPVEENPEP 102


>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 117  KLSFAKKKTSSPLITSESLFRVKKCNQCLCFSFGMWYYQ 233
            K++    K S  L T + L RVKK  + LC +   W  Q
Sbjct: 1304 KIACGSSKVSYVLETEDLLVRVKKRRKTLCHNQDSWVRQ 1342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,152
Number of Sequences: 28952
Number of extensions: 254031
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)