Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0497
         (590 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IKQ6 Cluster: Putative uncharacterized protein; n=2; ...    34   2.2  
UniRef50_Q8I3B5 Cluster: Putative uncharacterized protein PFI016...    34   2.2  
UniRef50_Q9W6E1 Cluster: Neurocan core protein; n=2; Gallus gall...    32   8.7  

>UniRef50_Q8IKQ6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3018

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = -2

Query: 475  DSHHYRPRNWCRES-NTH-INISLSIKFMYFLQVSS-QSDAWFSSYNGA--SVKTTRFIY 311
            D H+Y   N  +   N H +N    +K   F+ ++  +++ W  S N    S  T  F  
Sbjct: 1535 DKHYYELENILKNKLNEHSLNYQSLLKMKRFISMNDMENNNWIQSKNDIIMSYITKHFYS 1594

Query: 310  *YKYIFMK*NINLSTIDLHVYE 245
             ++YIF+  NIN+   + H+ E
Sbjct: 1595 FFEYIFINDNINIKYFNNHLIE 1616


>UniRef50_Q8I3B5 Cluster: Putative uncharacterized protein PFI0160w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0160w - Plasmodium falciparum
           (isolate 3D7)
          Length = 3135

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -2

Query: 280 INLSTIDLHVYELCRNSSKYNTIAKVFMEHAVIIYSRSVFKIF---IFFGREYENITHLV 110
           I+ + I L+ Y+   + S YN I K+     +  +  S F I+   I+F +   NITH++
Sbjct: 672 ISKTNISLYCYKESHHISLYNYIKKIISSIFLFCFIYSEFDIYQNVIYFPKHLHNITHIL 731

Query: 109 TIAHRHQQFRSYSQATVY 56
                     S  Q+++Y
Sbjct: 732 HFCDEPYISSSCIQSSIY 749


>UniRef50_Q9W6E1 Cluster: Neurocan core protein; n=2; Gallus
            gallus|Rep: Neurocan core protein - Gallus gallus
            (Chicken)
          Length = 1290

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 490  SHPHKDSHHYRPRNWCRESNTHINISLSIKFMYF 389
            SHPH   HH++PR   R+   H+ +    +  YF
Sbjct: 1257 SHPHHQHHHHKPRKERRKHRKHLRLDWMEEGHYF 1290


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,372,906
Number of Sequences: 1657284
Number of extensions: 10593944
Number of successful extensions: 22136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22130
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)