Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0497
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   6.2  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    25   6.2  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.3  

>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 175 SRSVFKIFIFFGREYENITHLVTIAHRHQQFRSYSQATVY 56
           + S+   + FFG  YE+   LV I +      S+S A +Y
Sbjct: 43  TNSICSHYQFFGGHYESFELLVVIVYYFSHVGSFSLAEIY 82


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 416 NIYMSVGLPTPVAGAVMM 469
           +IY SV +PTP+ G++++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 514 PAKGTGTASILYRYYINNPTMIAT 585
           PA G+G  S+   + +NNP++I++
Sbjct: 112 PANGSGAGSVGVFFALNNPSIISS 135


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = +2

Query: 284 LFHKNIFILIYKSSGFYGCS-----VITTEPCI 367
           L ++++FI+IY   G Y C      V+T  PC+
Sbjct: 388 LRNEHVFIIIYSVLGTYFCGVMVRLVLTLTPCV 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,649
Number of Sequences: 5004
Number of extensions: 46826
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)