Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0497
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0150 - 8816714-8817806,8817993-8818126                           29   2.1  
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017...    29   2.8  
02_04_0411 + 22670418-22670499,22670708-22671045                       28   4.8  
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    28   4.8  
06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58...    27   8.5  

>11_02_0150 - 8816714-8817806,8817993-8818126
          Length = 408

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 181 IYSRSVFKIFIFFGREYENITHLVTIAHRHQQFRSYSQATVYCCFTYILSIDL 23
           IY+     +   FG      T LV   + +Q+  S+ QAT++ C ++  ++ +
Sbjct: 219 IYAEQDLSVLSLFGPGGIGKTTLVQYIYNNQEVHSHFQATIWVCVSFNFNVSM 271


>10_07_0014 +
           11800251-11800643,11800721-11801288,11801694-11801729,
           11802908-11802911,11804142-11805108
          Length = 655

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
 Frame = -2

Query: 478 KDSHHYRPRNW------CRESNT-HINISLSIKFMYFLQVSSQSDAWFSSYNGASVKTTR 320
           +D+    PR W      CR+       I+L    +Y +  S+  + W+S Y+G  +  TR
Sbjct: 456 QDTFTAPPRKWLKMHLVCRKPRIDRCTIALRFDTIYLMAFSTNQNQWYSMYSGFPIAHTR 515

Query: 319 FIY*YKYIFMK*NI-NLSTIDL 257
             +   Y  +     NL T+ L
Sbjct: 516 LPFDEDYFALAGGTSNLVTVPL 537


>02_04_0411 + 22670418-22670499,22670708-22671045
          Length = 139

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 442 YTSCGGGNDENLCGG 486
           Y+ CGGG D+  CGG
Sbjct: 91  YSECGGGGDDGDCGG 105


>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 448 SCGGGNDENLCGGEK 492
           SCGGG+DE  CG E+
Sbjct: 144 SCGGGDDEGCCGVEE 158


>06_01_0070 +
           582659-583426,583535-583624,584130-584208,584387-584493,
           584619-584740,585003-585030,587148-587390,587986-588153,
           589133-589226,589648-589746,589995-590150,590379-590629
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 197 GARCHNL-LKICF*DLHFFWSRIRKYNPP 114
           G R  NL L++C  D HFF+  I  YN P
Sbjct: 460 GKRWENLILELC--DEHFFYEEIENYNEP 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,468
Number of Sequences: 37544
Number of extensions: 289165
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)