BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0497 (590 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0 SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 >SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 28.3 bits (60), Expect = 5.0 Identities = 13/71 (18%), Positives = 37/71 (52%) Frame = -2 Query: 433 NTHINISLSIKFMYFLQVSSQSDAWFSSYNGASVKTTRFIY*YKYIFMK*NINLSTIDLH 254 +T+ S + ++++ +SQ+ + +YN ++ + TR+++ Y + +T+ +H Sbjct: 71 HTYNTTSQATRYVHTYNTTSQATRYVHTYNTSTSQATRYVHTYN------TTSQATLYVH 124 Query: 253 VYELCRNSSKY 221 Y +++Y Sbjct: 125 TYNTTSQATRY 135 >SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 316 Score = 27.5 bits (58), Expect = 8.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 191 VLHENFRYCIILARVSTELINMKINSR*VNILFH 292 ++HE R CII R + I + N+R + ++H Sbjct: 83 IMHEILRACIISLRPALSFIRYRCNTREIASVYH 116 >SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1837 Score = 27.5 bits (58), Expect = 8.7 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +2 Query: 44 GKTAIDSGLAVTPELLMSMSDGNEVGYIFVFATKKNEDLKNR 169 GK+ D+ + + LL ++ GN GY+F KK DL +R Sbjct: 1530 GKSTTDALVYLLHILLHNLHRGNGAGYLFFADFKKGFDLIDR 1571 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,976,554 Number of Sequences: 59808 Number of extensions: 329527 Number of successful extensions: 657 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 657 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1434459094 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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