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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0497
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/71 (18%), Positives = 37/71 (52%)
 Frame = -2

Query: 433 NTHINISLSIKFMYFLQVSSQSDAWFSSYNGASVKTTRFIY*YKYIFMK*NINLSTIDLH 254
           +T+   S + ++++    +SQ+  +  +YN ++ + TR+++ Y         + +T+ +H
Sbjct: 71  HTYNTTSQATRYVHTYNTTSQATRYVHTYNTSTSQATRYVHTYN------TTSQATLYVH 124

Query: 253 VYELCRNSSKY 221
            Y     +++Y
Sbjct: 125 TYNTTSQATRY 135


>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 VLHENFRYCIILARVSTELINMKINSR*VNILFH 292
           ++HE  R CII  R +   I  + N+R +  ++H
Sbjct: 83  IMHEILRACIISLRPALSFIRYRCNTREIASVYH 116


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 44   GKTAIDSGLAVTPELLMSMSDGNEVGYIFVFATKKNEDLKNR 169
            GK+  D+ + +   LL ++  GN  GY+F    KK  DL +R
Sbjct: 1530 GKSTTDALVYLLHILLHNLHRGNGAGYLFFADFKKGFDLIDR 1571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,554
Number of Sequences: 59808
Number of extensions: 329527
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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