Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0497
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical
           protein T09A5.12 protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 454 GGGNDENLCGGEK 492
           GGG+DE LCGGE+
Sbjct: 632 GGGDDEILCGGEE 644


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 421 NISLSIKFMYFLQVSSQSDAWFSSYNGASVKTTRFI 314
           N  + IK  YFL   S   ++   Y     KTT+F+
Sbjct: 690 NTGIDIKEEYFLPAGSSEKSFIEQYRDQFGKTTQFV 725


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 421 NISLSIKFMYFLQVSSQSDAWFSSYNGASVKTTRFI 314
           N  + IK  YFL   S   ++   Y     KTT+F+
Sbjct: 690 NTGIDIKEEYFLPAGSSEKSFIEQYRDQFGKTTQFV 725


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,784,192
Number of Sequences: 27780
Number of extensions: 256391
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)