Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0496
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   5.0  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    28   6.7  

>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 368  LKICIWNSTKYFIILYLAITWDNNP 442
            +K  I +S+ YF IL LA+ W+N+P
Sbjct: 1436 VKKSIKSSSTYFDILGLAVCWENSP 1460


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = -2

Query: 317 LLGDWWFCK-*FASIRFRYDEIFQTAD--YVNNVR---IVI*TIFIFKVLFETKFNMYGG 156
           L GDWW CK       +R D +F   D  Y NN     ++     I +  FE  F +   
Sbjct: 374 LTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQIESEINEHSFE-DFLVEEK 432

Query: 155 DNELDLLQQEEAERCEQ 105
             EL+ L  EEAER  Q
Sbjct: 433 QRELERLAAEEAERKRQ 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,923
Number of Sequences: 37544
Number of extensions: 220465
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)