Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0496
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    29   1.8  
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    29   2.4  
At2g46640.1 68415.m05818 hypothetical protein  and genefinder; e...    29   3.2  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    28   4.2  
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    27   7.4  

>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 523 LVSTNCISLAITVVNYYALLIAVGTSRW 440
           L+S+NC  L  + + YYA+L  VG  R+
Sbjct: 47  LISSNCPPLRRSEIEYYAMLAKVGVHRY 74


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 523 LVSTNCISLAITVVNYYALLIAVGTSRW 440
           L+STNC  L  + + YYA+L  VG   +
Sbjct: 47  LISTNCPPLRRSEIEYYAMLAKVGVHHY 74


>At2g46640.1 68415.m05818 hypothetical protein  and genefinder;
           expression supported by MPSS
          Length = 310

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 508 CISLAITVVNYYALLIAVGTSRWVIVPRYS*IQYYKILCTIPDTYL 371
           C+ + +TV  Y  LL  + T   V VP    + YY ++C +  TY+
Sbjct: 262 CVGIVMTVEMYCFLLTNI-TKLLVFVPVMHIVFYYYVICFLIYTYI 306


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 6   TSRNEANEXHLFCQTCDYD 62
           T ++   + HL C TCDYD
Sbjct: 45  TKKHHRTKYHLHCDTCDYD 63


>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 523 LVSTNCISLAITVVNYYALLIAVGTSRW 440
           L+S+NC  L  + + YYA+L  VG   +
Sbjct: 47  LISSNCPPLRRSEIEYYAMLAKVGVHHY 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,750
Number of Sequences: 28952
Number of extensions: 194145
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)