Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0495
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.8  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.9  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 KWVNGLMFKIITAICRYY 235
           +W+NG  F    AIC YY
Sbjct: 504 RWLNGSFFAAAYAICHYY 521


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 114 QNPSLDLRVQSTNVTMILILFINTNNEQDFRNVYTCY 4
           QNP L+ R Q      +LIL    N+  +F N+   Y
Sbjct: 244 QNPELEFRDQGYTRPKVLILLPTRNSAFEFINLLISY 280


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 228 RQMAVIILNINPFTHFS*FNNFANY 154
           +QM +I+ ++ P+T    F+ F NY
Sbjct: 256 KQMDLIVKHLRPYTALLYFDQFGNY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,399
Number of Sequences: 5004
Number of extensions: 38946
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)