Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0495
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    30   1.6  
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    29   2.9  
12_02_0503 - 19756561-19757991,19758606-19759967                       27   8.7  

>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 200 LIHSPISANLTILQIIHYSYYLVIFPSVNKILVWTCEFKAL 78
           L+ SP S     LQ I    +L+   + N+I VW  EF+ L
Sbjct: 69  LLISPNSLPYKFLQFIQNQGFLIAISNENEIQVWNLEFRQL 109


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 200 LIHSPISANLTILQIIHYSYYLVIFPSVNKILVWTC 93
           ++HSPI + L ++  +  +Y+  I+ +++KI   TC
Sbjct: 156 VLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPQVTC 191


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 223 LSILCCHLNELLGTGKDFWSEFALMNIRIIVLN 321
           LS++CCH+   L    DF     L +IRII  N
Sbjct: 724 LSLVCCHMLISLPDASDFKRMSKLESIRIIECN 756


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,458
Number of Sequences: 37544
Number of extensions: 199589
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)