Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0495
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12721| Best HMM Match : Patatin (HMM E-Value=8.1e-10)               29   3.9  
SB_755| Best HMM Match : MIT (HMM E-Value=0.055)                       29   3.9  
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_12721| Best HMM Match : Patatin (HMM E-Value=8.1e-10)
          Length = 251

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 YSHLSILCCHLNELLGTGKDFWS 282
           Y +LSI     N L+GTGK FWS
Sbjct: 184 YKNLSIDLFERNTLIGTGKLFWS 206


>SB_755| Best HMM Match : MIT (HMM E-Value=0.055)
          Length = 146

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +2

Query: 8   QVYTFLKSCSLFVL---MKRINII 70
           Q+Y FL+ C LFVL   ++RIN+I
Sbjct: 121 QIYNFLRLCELFVLHGSVRRINLI 144


>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 409 MIYYVCXLDPFLFATLQILRICXNLSVLC*R 501
           ++Y    +DPF+F ++++ R+C  L V+C R
Sbjct: 287 LMYSNSAIDPFIFGSIKLRRLC--LDVICGR 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,769
Number of Sequences: 59808
Number of extensions: 254724
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)