Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0495
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38220.2 68418.m04607 expressed protein                             29   1.8  
At5g38220.1 68418.m04608 expressed protein                             29   1.8  
At4g24760.1 68417.m03545 expressed protein                             29   1.8  
At2g37860.2 68415.m04648 expressed protein                             27   9.6  
At2g37860.1 68415.m04647 expressed protein                             27   9.6  

>At5g38220.2 68418.m04607 expressed protein
          Length = 238

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 200 LIHSPISANLTILQIIHYSYYLVIFPSVNKILVWTC 93
           ++HSPI + + +L  +  +Y+  I+ +++KI   TC
Sbjct: 165 VLHSPILSGMRVLYPVKRTYWFDIYKNIDKIGAVTC 200


>At5g38220.1 68418.m04608 expressed protein
          Length = 336

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 200 LIHSPISANLTILQIIHYSYYLVIFPSVNKILVWTC 93
           ++HSPI + + +L  +  +Y+  I+ +++KI   TC
Sbjct: 165 VLHSPILSGMRVLYPVKRTYWFDIYKNIDKIGAVTC 200


>At4g24760.1 68417.m03545 expressed protein
          Length = 365

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -2

Query: 203 TLIHSPISANLTILQIIHYSYYLVIFPSVNKILVWTC 93
           +++HSPI + L ++  +  +Y+  I+ +++KI +  C
Sbjct: 166 SILHSPILSGLRVMYPVKRTYWFDIYKNIDKITLVRC 202


>At2g37860.2 68415.m04648 expressed protein
          Length = 432

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 CCHLNELLGTGKDFWSEFALMNIRIIV 315
           C  + E+   GKDFW+EF L    ++V
Sbjct: 230 CATVAEVQKRGKDFWAEFELYVADLLV 256


>At2g37860.1 68415.m04647 expressed protein
          Length = 347

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 CCHLNELLGTGKDFWSEFALMNIRIIV 315
           C  + E+   GKDFW+EF L    ++V
Sbjct: 230 CATVAEVQKRGKDFWAEFELYVADLLV 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,561
Number of Sequences: 28952
Number of extensions: 181504
Number of successful extensions: 284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)