Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0494
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.36 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.7  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.7  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 262 DEIFQTADYVNNVRXXXXXXXIFKVLFETKFNMYGGDNELDLLQQEEAER 113
           D ++ + DY+   R       I+ +LFE+KFNMYG   E ++    E E+
Sbjct: 538 DNLWSSTDYL---RATLGALTIYLLLFESKFNMYGNKAE-EISHMSEVEQ 583


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 355 YGLVLKICIWNSTKYFIILYLAITW 429
           + L+LK+ +W +  Y+ +  L  TW
Sbjct: 25  FDLILKVLLWTAPWYYCLTTLFFTW 49


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -3

Query: 189 FYLKQNLTCTVV--ITNWIYF 133
           ++LKQ +TCTV     +W++F
Sbjct: 121 YFLKQKVTCTVTDPTIDWVFF 141


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 177 QNLTCTVVITNWIYFNKRRLRGASNRAIVLPMVAAPL 67
           Q+  CT+  TNWI  N     G   R I L  V A +
Sbjct: 462 QSPMCTMKDTNWIRRNMHLQFGPLKRQIFLTQVKADI 498


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 367 LKICIWNSTKYFIILYLAITWXNNPSRCAHRNXXXXXXDNSNSQ 498
           L IC+W S  +F++  LA    NN  + + ++      DNSN+Q
Sbjct: 53  LAICLWLSLTWFLV-ELAHARVNNDLQMSSQS-ANKNDDNSNNQ 94


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 212 YHYSNIVNVISCLKNLII 265
           YH+S I+ V++C+  L++
Sbjct: 260 YHWSQILGVVACIGGLVL 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,438
Number of Sequences: 5004
Number of extensions: 32387
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)