Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0494
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    29   1.6  
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    29   2.1  
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    27   6.5  

>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 522 LVSTNCISLAITVVNYYALLIAVGTSRW 439
           L+S+NC  L  + + YYA+L  VG  R+
Sbjct: 47  LISSNCPPLRRSEIEYYAMLAKVGVHRY 74


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 522 LVSTNCISLAITVVNYYALLIAVGTSRW 439
           L+STNC  L  + + YYA+L  VG   +
Sbjct: 47  LISTNCPPLRRSEIEYYAMLAKVGVHHY 74


>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 522 LVSTNCISLAITVVNYYALLIAVGTSRW 439
           L+S+NC  L  + + YYA+L  VG   +
Sbjct: 47  LISSNCPPLRRSEIEYYAMLAKVGVHHY 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,558,344
Number of Sequences: 28952
Number of extensions: 156040
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)