Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0493
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 120 2e-28
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 120 2e-28
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.5
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 27 2.0
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 6.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.1
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 120 bits (289), Expect = 2e-28
Identities = 68/148 (45%), Positives = 87/148 (58%)
Frame = +2
Query: 68 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX 247
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRR
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 248 *KMLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGI 427
K+ V K ++ L K + + + SIGI
Sbjct: 63 EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122
Query: 428 YGLDFYVVLGRPGFNVAHRRRKTGKVGF 511
YG+DFYVV+ RPG VA R+ + G+VG+
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGY 150
Score = 118 bits (284), Expect = 6e-28
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYD
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIIL 576
+ + +KA + G H++ ED + WF+QKYD ++L
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 120 bits (289), Expect = 2e-28
Identities = 68/148 (45%), Positives = 87/148 (58%)
Frame = +2
Query: 68 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX 247
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRR
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 248 *KMLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGI 427
K+ V K ++ L K + + + SIGI
Sbjct: 63 EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122
Query: 428 YGLDFYVVLGRPGFNVAHRRRKTGKVGF 511
YG+DFYVV+ RPG VA R+ + G+VG+
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGY 150
Score = 118 bits (284), Expect = 6e-28
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYD
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIIL 576
+ + +KA + G H++ ED + WF+QKYD ++L
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 101 YEDSALHF*NYXSEPSSPFYLSST 30
YE+ + + +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 239 GYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 123
G +Y W I A +L V P PWR+ S+ + + I
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 578 LSMIPSYFC-WNHFIASSFVRRWGI-PLFLSYAFCVLR*NLA 459
LS I S+ W+H+I++SF+ +W + L LS A V N A
Sbjct: 509 LSTIHSFINNWSHYISASFLSKWIVCALSLSIAVNVFLLNAA 550
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 98 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 241
H++ + N +G A K+ +QLTG+ R GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 418 NWNLWTGLLRXTWPARFQRSTQK 486
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,129
Number of Sequences: 5004
Number of extensions: 47211
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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