Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0493
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 121 4e-28
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 120 1e-27
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 120 1e-27
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 93 1e-19
02_02_0196 + 7685933-7685961,7686086-7686284 50 1e-06
12_01_0108 + 846960-847247,847640-847693 29 2.0
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 28 6.2
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 6.2
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 27 8.2
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 121 bits (292), Expect = 4e-28
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 4/147 (2%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 S--IVQSEELKQ--KKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGI 427
V+ E+ Q + L+ + +N+ VT S R ++ + ST GI
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIVDNLIPSVTRS-TRAKRINLSNQCFRYDPST----GI 123
Query: 428 YGLDFYVVLGRPGFNVAHRRRKTGKVG 508
YG+DFYVVL R G+ VA RRR +VG
Sbjct: 124 YGMDFYVVLERAGYRVARRRRCKSRVG 150
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLK+ DN + + + + ++
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKR---INLSNQCFRYDP 119
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKS-----GIPHRLTKEDAMKWFQQKYDGIILN 579
TG+ + +R+ + R+ GI HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 120 STGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 174
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 120 bits (288), Expect = 1e-27
Identities = 61/110 (55%), Positives = 74/110 (67%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
A ++ + ++ + GI HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
Score = 117 bits (281), Expect = 8e-27
Identities = 69/143 (48%), Positives = 82/143 (57%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLD 439
V K + L K + + + S GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 440 FYVVLGRPGFNVAHRRRKTGKVG 508
FYVVL R G+ VA RRR +VG
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVG 151
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 120 bits (288), Expect = 1e-27
Identities = 61/110 (55%), Positives = 74/110 (67%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
A ++ + ++ + GI HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
Score = 117 bits (281), Expect = 8e-27
Identities = 69/143 (48%), Positives = 82/143 (57%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLD 439
V K + L K + + + S GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 440 FYVVLGRPGFNVAHRRRKTGKVG 508
FYVVL R G+ VA RRR +VG
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVG 151
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/63 (73%), Positives = 52/63 (82%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 260 SIV 268
V
Sbjct: 95 CYV 97
Score = 78.2 bits (184), Expect = 4e-15
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 405
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 92 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +1
Query: 505 GIPHRLTKEDAMKWFQQKYDGIILN 579
GI HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEGVILN 68
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 416 SIGIYGLDFYVVLGRPGFNVAHRRRKTGKVG 508
S GIYG+DFYVVL R G+ VA RRR +VG
Sbjct: 14 STGIYGMDFYVVLERAGYRVARRRRCKSRVG 44
>12_01_0108 + 846960-847247,847640-847693
Length = 113
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 520 GGGESHFSCLTPSVCYVETW 461
GGGESH SC P ++ W
Sbjct: 9 GGGESHLSCADPPELVIQDW 28
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLK 315
K A + TVRG KA ++LE GLK
Sbjct: 281 KIACYVTVRGEKAMQLLESGLK 302
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 176 APTPWRHESACHRIHQHICSS 114
APTP+ ++ A H + H+C++
Sbjct: 63 APTPYENDKALHFLRHHLCAT 83
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -2
Query: 561 IFL-LEPLHSIF-LCEAVGNPTFPVLRLLCATLKPG 460
+FL ++P H I +C A G+ TF +L ++ + KPG
Sbjct: 184 LFLNVQPDHHILDMCAAPGSKTFQLLEMIHQSTKPG 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,921
Number of Sequences: 37544
Number of extensions: 309022
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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