Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0493
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0) 140 8e-34
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 30 1.6
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87) 28 4.8
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 6.4
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 28 6.4
SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
Length = 260
Score = 140 bits (339), Expect = 8e-34
Identities = 82/154 (53%), Positives = 99/154 (64%), Gaps = 9/154 (5%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRR
Sbjct: 2 NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRR----- 56
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILA--SVFKNTLTWVSSTI------- 412
+E++ ++RG E + G+ ++ S N + I
Sbjct: 57 ----NEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYD 112
Query: 413 XSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFP 514
SIGIYG+DF+VVLGRPGFN++ R+ K G+VGFP
Sbjct: 113 PSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFP 146
Score = 126 bits (303), Expect = 2e-29
Identities = 64/103 (62%), Positives = 71/103 (68%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K +VHCTVRG KAEEILE+GLKV+EYEL + FSATGNFGFGIQEHIDLGIKYD
Sbjct: 59 KISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIY 118
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQK 558
F S +K + G PHRLTK+DAMKWFQQK
Sbjct: 119 GMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 141 VTG*LVPPRCWSNSQDNSLYFP 206
VT LVPP W+ SQD +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 374 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTASFXY 243
P P++P + L + L T+KPL RIS++L+ ++Q + S+ Y
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPY 347
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 170 TPWRHESACHRIHQHICSSKAF*YEDSALHF*NYXSEPSSPFYLSST 30
T R +S R + CS+K+ + A HF N+ P PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610
>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
Length = 770
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 390 NVFLNTEAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSIFXXRRIPKDRTVYL 211
N LN+ + + + TP + D +TP +D S T SI R + +
Sbjct: 173 NTHLNSRRE--QDPNIATPASLRGDTETPARDHMTSQSGQSTPSSILSERFLLQSPFKDA 230
Query: 210 ALENTGCCPVSCSNTLAARVSLSPDSPT 127
E +G P TL + +PD+PT
Sbjct: 231 EPETSG-SPYQRVFTLDSPTVSTPDNPT 257
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 334 RRDNFSATGNFGFGIQEHIDLGIKYD 411
++ ++SATG+F ++EHI G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 374 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTASFXY 243
P P++P + L S S +KPLSRI ++ + ++Q +AS+ Y
Sbjct: 299 PLPRIPTSPSLVSLLARPSYLYKPLSRIPTSPSLVSLQASASYPY 343
>SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 451 TWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIIL 576
TW R ++S +K R +P L+ D+M WF ++L
Sbjct: 37 TWHLRRRQSLRKR-KRAMNVPEVLSPTDSMPWFDTVLSSVLL 77
>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 140 GDRLTRAAKVLEQLTGQQPVFSKARY 217
G R TR A +QLT + VFSK Y
Sbjct: 66 GSRRTRTAFTHQQLTALEKVFSKTHY 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,256
Number of Sequences: 59808
Number of extensions: 366613
Number of successful extensions: 900
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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